Nlec004169.1
Basic Information
- Insect
- Neodiprion lecontei
- Gene Symbol
- grn_1
- Assembly
- GCA_001263575.1
- Location
- NW:840442-902238[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2 2.2e+03 -2.4 0.1 8 20 8 20 6 21 0.82 2 2 1.7e-19 3.1e-16 57.9 4.7 1 35 415 448 415 449 0.98
Sequence Information
- Coding Sequence
- ATGGACATGAGCAGCGAGTCGAGCTCTACCCGATGGTACGAGCCGCCCAGGGGATCCCTCGAACCTCCGACCGGTTCCGGGTCGTTGGCTGCGGGTGGggccggcgtcgcgacgcccgacTACAGGGGATACTACCCCCATGCTGCACCGACGCCTCACCACTCGGCCGCCGCGCACGCCGCCGCCGCCCACTACGCCCACAGCAGAATGTCGAGCGGCGGAGTGACGAACGGAGGTGGTAGCCAAGTGTGCAGACCGCACTTCCACAGTTCGGTACTTCACCCTTGGTTGTCGGGTTCGAGTGCGGACAGTAAACCATGGGGTTTTCCATCTACGACGGCGTCGACCGGAGCGACGTCGGGTTCGGGCGAAGACAAGCCCCAGAGTCCGTTGGGCTCGTCGCTACCGCCGACGTCCAGCAGCCTGACGAGTCACGGCGGAGCGGCTTCCGGTCACCACCTCTTCTCGTTCCCGCCAACGCCGCCGAAGGACGCGACGCCGGACAGCATAACGACGAGTACGACCTCGAGctccaacaacaacaacaacaacaacaccagcaacaacaacaacaacaacaactcgAGCTCCCTCGGACTCGGGGGCGGAAGCAGCGAGTACCAGGCGGCTGTTGCCCACGCCGCCGTTATGGGGGCGTTCATACACCACCAGGACGCCCTCGGCTCGACTTCCGGAAGTTCCTGCGACGTGAAGCCATCGGTGATGCTGGGTCACCACCACGGCGCCTCCTCGCCACCCCACCAGCACAACGGATCGGGGAACTCCGGGCAGGTCCAGAAGCAGCGGGAAGGTAATAACCAATCTGCATCCGGGTCTGTCAATCAGGCTAACCAGCAGCAGACTGGTGCGGCCGGTGGTGTCAaccaccagcagcagcagcaacagcagcagcagcaacaggaTTACCAAAACCAGGGCGCTACCTCACCCCGGGACTCCTATTCCACATCCCATCATCCATCCGCACCGTCCCAGTACGATCCATCCGCTGCTTACAACATGTATCAACACCTTCAGTACTCCGGTCATCACTCCCACAATCCCCACAACGGGCCGACTATATTCTCGGGGAGTCATCATCCCACTACCGGCGTACCCGGAATTAGTCCCGATGCTAAACTTCTCGGTTCGCACGGGAACACGCCTAATTCACCCGGGtcgcaacagcaacagcagcaaaaGCCAAGGAACAAATCCAGAACGTCCGCCGAGGGTCGCGAGTGCGTCAACTGCGGGGCGACCTCAACTCCTCTTTGGCGACGGGACGGGACGGGACACTACCTGTGCAATGCCTGCGGTCTCTACTACAAGATGAACGGACAAAACCGGCCACTCATCAAGCCGAAACGCCGCCTGGTGAACCGACCACTGACGATGAAGAAAGAGGGAATACAGACGCGGAATCGAAAGCTGTCGTCGaagagtaaaaagaagaaggctGGCGGGTGTCTCGGCCTCGGTGGCGTCATGGGGGACATGATCAAGGCCGGGGGCCACCTCGACCTCGACAACAAGCCGTTCCACTCCGGGTTCGGATCGCCGATGGGCACGTCACAGCATCATCACTCGATGCATCCCGCGATGCAGCACTACATGTATCACACGGGGGTTGGAGTCACGGGGGGACTTCACCAGGGCTTTGCTCCACCTCCGGCACCACCGCCGATTCATCCTCATTCCCATTCGCATTCCCACTCACACCACATGGCCAGTCTTCAGGGTCTCCAGTTGGCCGCTACCACGAACGCCATGACCGGGTGGAGAACAGAGTACACATGA
- Protein Sequence
- MDMSSESSSTRWYEPPRGSLEPPTGSGSLAAGGAGVATPDYRGYYPHAAPTPHHSAAAHAAAAHYAHSRMSSGGVTNGGGSQVCRPHFHSSVLHPWLSGSSADSKPWGFPSTTASTGATSGSGEDKPQSPLGSSLPPTSSSLTSHGGAASGHHLFSFPPTPPKDATPDSITTSTTSSSNNNNNNNTSNNNNNNNSSSLGLGGGSSEYQAAVAHAAVMGAFIHHQDALGSTSGSSCDVKPSVMLGHHHGASSPPHQHNGSGNSGQVQKQREGNNQSASGSVNQANQQQTGAAGGVNHQQQQQQQQQQQDYQNQGATSPRDSYSTSHHPSAPSQYDPSAAYNMYQHLQYSGHHSHNPHNGPTIFSGSHHPTTGVPGISPDAKLLGSHGNTPNSPGSQQQQQQKPRNKSRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLVNRPLTMKKEGIQTRNRKLSSKSKKKKAGGCLGLGGVMGDMIKAGGHLDLDNKPFHSGFGSPMGTSQHHHSMHPAMQHYMYHTGVGVTGGLHQGFAPPPAPPPIHPHSHSHSHSHHMASLQGLQLAATTNAMTGWRTEYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00174688;
- 90% Identity
- -
- 80% Identity
- -