Nlec000425.1
Basic Information
- Insect
- Neodiprion lecontei
- Gene Symbol
- znf711
- Assembly
- GCA_001263575.1
- Location
- NW:1568-5673[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.025 1.6 8.7 0.2 3 19 203 219 201 221 0.91 2 10 0.00058 0.036 13.8 0.8 1 23 512 534 512 534 0.95 3 10 3.8e-06 0.00024 20.7 2.0 1 23 540 563 540 563 0.96 4 10 0.0089 0.56 10.1 1.4 2 23 569 590 568 590 0.96 5 10 3.2e-05 0.002 17.8 4.3 1 23 596 619 596 619 0.97 6 10 1.9 1.2e+02 2.8 2.4 3 23 624 644 622 644 0.91 7 10 0.0051 0.32 10.8 0.1 1 20 767 786 767 788 0.92 8 10 9.7e-05 0.0061 16.3 0.2 1 21 838 858 838 859 0.96 9 10 0.0072 0.46 10.4 2.3 2 21 866 885 865 886 0.93 10 10 0.0059 0.37 10.6 3.2 2 20 893 911 892 912 0.94
Sequence Information
- Coding Sequence
- ATGTCGCATGTTTCTTACTCGAAATTGATATCTTTAAATTATCCAAAACTTTGTCCCAAGCCTGCGCCGCAACAGACACTTGCTGAGGTCCTTCAATCCGAACCAGTCAAGCGACTGCTGAGCCAGCCAAATATTGTGATAGAAACAATTCCGAAAGTCCAAACGACTCCCAAATCTAATGTATCCAACAACAATGTCCATTTACCGGTTGATAAGAAGAATGGGCCGAGCAAGGTGGCGCAGAGCAAAGGCATCGGGTCTGAAATATCAGTAATGACAGTGGAAACGGAAAGCAAAGATAAATCTAGGCTGCTACCTGCTAAGGGGGATGGAAAGTCTGAAATAGCCCTGATGGTCGTCAAGCCTGAGCAAAAACAATGTGGTCATCACGGCCCATGCGAAAATATCGTTTGCGACGTTTCCGTGCTACAGTACGTTGACCAGGGTGGAGTTCTACCAATGCTAGCTGTGGGGATAGAGGAGAACGAGATCAATGCCCCGGTTGAAAAGCATTGCAAAAATCCGCTGTGCGATGCATTGAGCATAGATCATGACCGATGTCGACGAGCGTTGATTAAACTCTACCGTTGCGATTTGATGAGTGCTTGCGACATTTGCGGCGTTGTATTCAAGACACGGAGGTCTAGGATGAGTCACAAAAGCTGCATCAGGAAGGAGGTCTATAGGCACAATCAAACAGACGGTGCTCAGATACTTAGGGAAAAAATGAGGGAGCGAGAACTGCAGATGATCGAGGCAGCCAAGaccaagaaaaaagaacacttGGACCCGGCCACTGAGTACAAAAAGACTATGGAGTCCCTGAGGAATAACAAGGAGCTGATCATCATCCCAAAAACCATTCCCCAGCATCAGCCAATTGTCACAATAAAAACACTGTCCCCGGGCAACCAGCCGAGCGTTGTACAAAGTACTAACTCCCGAGAAGTctttggaaaacttttgcCCTCTATTCCGATTGTTTTCCCACCACAGAATACAATCGTCGGCAAAAGACCGGGTTCTGAGACCAACGAAGGACCCGCCGTGAAGCAACCCAAGATAACAAATGTGTTTTGCACTCCACCTCAACACGCAAGGCTTGGTCAACAGTACATTAAAGTTTCCTCGGTCACGCAATCCAACATCGTTCAGCCGATGTCTCTCAATGATTGGTTCGCTTCTCAGGCAAATATCGTAACCTCGAGCCAAAATACAGCTCTCAAACCTTACCTGACCCCCATCAGAGTCGTCCCTATCACCAGCCTGAAGTCAGCCCCTTCGCTTCGGCATCAAACTCACGGTATTCCTGCGTTTTGCTTGGTACCGGACAATCTTCCCAAACCTGTACCTGTCTCAAAACTGCAGGCCATTCAGCCAGCTCCGATAGCTCCTAGCCCGCCAAGGTCTGTTgcacaaaataatgaaacagaGAATGTAGAGCAGCAGAATTCACAGACAGCAAAAAGTGCGACGAACACAAGAAGGAAATCTCAAGCTCGTAGGAAATctgaggagaaaaattcaaaggttTTCAAATGTCCTTATTGTTTCAAGGGTTTCAGCACAGATTGGTATTTCAAAATGCACGTAGCTGGGCACACGGGAGAAATGTTATTCACTTGCAAAACGTGTGAAAAACCATTTAGCAATAGATACGATATGAAAAAACATATGCTCAATGAGCACAATGATGGCGAATGCAGATGCGAGATTTGTGGACAGATATCTATATGCAAATCGGCACTTGAGATTCACATTCGGTCCCACACCGGTGAAAGACCCTTCCACTGTACAGAGTGTGATCTGTCTTACAGATCGAGCACTGACCTTAAAACGCATCAACGAAAGCGACACAACTCTACGGACTGCCCATACTGCCATATTCATCTTGTAAAGGCAGATCTTCAGGCACACTTGGTGTCGTGTCATCAGATGACGGAAAAAGAAGCATTGCATGAAATTCTGCAAGGACAGGAACAGGCAGTGAATGGAAATGAATCGTCCGAAATTGAGGTGTCAGATTGTGAGTCAATGGCAAATGGAATCCTGATGAGAATTAAAGAGGAGCTCATAGAGGAGGCAGCAGCTGTGAATGAAACTACGAAGTTTCAGAGTAGTCGTAATGGTTCAGATTCAAACAAGAGGAAAAAACAGATTGCAAATAAACCTGCCCATACGAAGTCTAAAGGAAACGGTGTGCACAATGCAGAGGGAAACCAGAATGTATGCAATTTGAAGGAAACTGAAACTAAGCCTATCGTTGTCAGGAGGAGCACTAGGAGATCGAACTCTAATTTTCAATGTACCatttgcaaagaaaatttcgatagCTCCACACTGCTTGATGATCATGTAGCTAATGAACCCAAAGAAACTGTGGAATGCCTCGCATGCAAGAGCTTGTTTCACAGCCAGACTGATTATGATAAACATGGCAATAGCTGTGGCAAAAGTTCCTGCAAACAGTCGTCTTgcctgaaaaattcaacaactgGACCGCTGAGACCATTCCAGTGTGAGATCTGCCtgaaagtatttaaaaatgatggaaaactCCGTATTCACATGAATCTGAGTCCGCAAAATTTCATAACGTGCGTTAGATGCGGCAAGAAATTTCACACTAATCGCGAGTACAGATTGCACATGCACAATAATTGTGTTGAATTAATTAAGTGCCGTAAGTGTAaccgacaattttcaaacaaaagaaCACTTGATAACCACATTTGCTGA
- Protein Sequence
- MSHVSYSKLISLNYPKLCPKPAPQQTLAEVLQSEPVKRLLSQPNIVIETIPKVQTTPKSNVSNNNVHLPVDKKNGPSKVAQSKGIGSEISVMTVETESKDKSRLLPAKGDGKSEIALMVVKPEQKQCGHHGPCENIVCDVSVLQYVDQGGVLPMLAVGIEENEINAPVEKHCKNPLCDALSIDHDRCRRALIKLYRCDLMSACDICGVVFKTRRSRMSHKSCIRKEVYRHNQTDGAQILREKMRERELQMIEAAKTKKKEHLDPATEYKKTMESLRNNKELIIIPKTIPQHQPIVTIKTLSPGNQPSVVQSTNSREVFGKLLPSIPIVFPPQNTIVGKRPGSETNEGPAVKQPKITNVFCTPPQHARLGQQYIKVSSVTQSNIVQPMSLNDWFASQANIVTSSQNTALKPYLTPIRVVPITSLKSAPSLRHQTHGIPAFCLVPDNLPKPVPVSKLQAIQPAPIAPSPPRSVAQNNETENVEQQNSQTAKSATNTRRKSQARRKSEEKNSKVFKCPYCFKGFSTDWYFKMHVAGHTGEMLFTCKTCEKPFSNRYDMKKHMLNEHNDGECRCEICGQISICKSALEIHIRSHTGERPFHCTECDLSYRSSTDLKTHQRKRHNSTDCPYCHIHLVKADLQAHLVSCHQMTEKEALHEILQGQEQAVNGNESSEIEVSDCESMANGILMRIKEELIEEAAAVNETTKFQSSRNGSDSNKRKKQIANKPAHTKSKGNGVHNAEGNQNVCNLKETETKPIVVRRSTRRSNSNFQCTICKENFDSSTLLDDHVANEPKETVECLACKSLFHSQTDYDKHGNSCGKSSCKQSSCLKNSTTGPLRPFQCEICLKVFKNDGKLRIHMNLSPQNFITCVRCGKKFHTNREYRLHMHNNCVELIKCRKCNRQFSNKRTLDNHIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01049230;
- 90% Identity
- iTF_01049230;
- 80% Identity
- -