Nlec006249.1
Basic Information
- Insect
- Neodiprion lecontei
- Gene Symbol
- -
- Assembly
- GCA_001263575.1
- Location
- NW:62449-66175[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00037 0.023 14.4 1.3 3 23 255 275 254 275 0.95 2 11 0.00026 0.016 14.9 1.4 3 23 280 301 279 301 0.95 3 11 0.011 0.72 9.7 2.9 1 23 310 332 310 333 0.94 4 11 0.02 1.3 9.0 1.6 1 23 366 388 366 388 0.97 5 11 0.072 4.6 7.2 1.0 1 23 391 414 391 414 0.96 6 11 0.0016 0.098 12.5 3.7 1 23 430 454 430 454 0.93 7 11 0.00013 0.0082 15.9 0.9 1 23 468 491 468 491 0.98 8 11 0.0038 0.24 11.2 2.1 1 23 497 521 497 521 0.97 9 11 0.00029 0.018 14.8 0.4 2 23 528 550 527 550 0.91 10 11 3.4e-08 2.2e-06 27.1 0.8 1 23 556 578 556 578 0.98 11 11 6.7e-06 0.00042 19.9 6.1 1 23 584 607 584 607 0.97
Sequence Information
- Coding Sequence
- AtgtcgataaataaaatgtccGATAGAAATCATCAAGAATTTACTAGTTTATTATCGGCGTATTCTAACCAGGATGACTCAATGCTCGAATCAATAGATGGAATATCCTTGGAAAATGTCCACACAGTATCGCTTGATTATTTGAACGAATGCATGAGCGATCTGGAAAGTAAGGATTCGGGAATACGTTTGTCTCCCGGTTCTCCTGGAATGTTCCCATCGGATCATCGCATGGACAAATTTACTGAGCATGATTTGGCAAATCTTGATATCGCCCTGGTTAAAGAAGGggatttatatttgaaatctgaatccaaatttgaaaaaaataatgttattattcCTAGATTAGGacatgaaatatataaaaccAAGAACAATCTCGATTATACCCAAAATTCTGAATCTATTCTAGCAATTTCAATAGAGAATTTACAACGTAATTGTAAAACATGTGTTGAAGTATGCGGTGAACGTGAAGATGCATTTATGAAGCTCGATCAGATTCAAAAGAATACTTTGATCCATGATTCAGAGTTGGATAAACACAACGAACTTTGTTCTGGTGAATTCATCATCAAAgcgcaaaaaaataatgaaactgaATGTCACAAAGGACCATCAAAGAGCGAGTATAGCACTGACAGGGATTcagaaattgagaaaagctCAGACACAGAGGAACCGGCTCATGACTGTAAGATTGACGATGAAGACAAGTCGTGcgacaataaaattaaagtcGAACTACTGCCTCAAGCTTGTGAACAATGCCCAATGACATTTAAGTACAAAAGACACTTGGACCGACATTTGGAAGGTCATCAGAAAAATAACTGCCCGTATTGCGACGCTAAATTTGCCAGAAAAAAACATCTGGACGTTCATTTGTTTCGGCTACATGGAGAGCGGATAACTAAATACCCTCATACATGCGACATCTGTTTAAAAGGTTTTCCAAAGCGACTGTTACTAAATCGGCACAAAGCTAATCATCATAACGAAAAGGCTCAAACGTGTGCAGACTGCGGTGATATATTGGACAACAGTTTAGAGGCTCTAAAACATAGTGAAAAACATAGTCAGGAGAGAAGATTTCATTGTGATAAATGTCCTCAGGCTTTTAGTATGGAACAGAAGTATCTAATACATGTAAAAAATCATGATACATATAAATGTCCGAGATGTGAGTCTGGTTTTGCCTCTAAGAAAAGAGCCAATGAACATTACCGGTTAAAACATTCAGCAAAAGTACCCAAAGAACCTGAAACTTCTATAACTGGGATGTTTTACTGTAACGATTGCCGGCATAACTTCATGACCAAAGATAGCTATCTCCGCCATTTGAAAACAGCATCGCACCTCAGTAAAATGCACGCCGAAATACCTCTAAAAGCTTTATTCACTTGtacaatttgtacaaaacAGTTAACATCGCGTAAAGCATTAGATCAGCACATCAGAAGAGTGCAcagagatgaaaagaaatattcatgtGATACTCAGGGATGCGAGTTTCATTCGACTAATAAAAGCGACTTGGAAAGGCATAGGCAATTGCACAtagaagagagaaatataGTTTGCGAACATTGTGGAAAGACGTTCACTACGATCAGCATCCTTAAAGATCACGTACTGTATGTGCATAACATGGAAAGACAATTTGTGTGCGAAGAATGTGGAAAAGCATTCAAAAGGAACAGCCTGCTCAACAGACATAAGATGTCTCACCAACAAATCAGACCCTTTACCTGCGAACAGTGCGGAGCTGCATTCAAAAGATCTCATCATTTAACAAGGCACATGGAATCATGTCACAGGATTAcgttagaaaagaaaaagcggGTGGTCAAGTTAATGAAAACTGAAGATGGTCGATTGGTACCAATTCCTGAGGAACCTAAAAAACCGAAAACTAAAAGAGTTAAATCTAAGAAGGATAGTCAACTGATTAGCTACGATGAATCTAGTGCGAGTGTAACGAATCGTCTCCTTATAAGTAAAGACATGGCCGAACTGTCTACGGAATTGTCGCACGTTACTCCCATGTCTACAATTATGAGCTCAGAATCGACTGACATGTCCCTAGGACTGGCAAATACAATTTCTGAGGTTGATTCTGTGCCTCAAATATTGTCTCTGGTCGATGTTAACTCTGGTCAAGTAGTTACTGTCGAAGTAACGAATCCGGATACACTGCCATTAACGGATTTGGTTGACCAATTTGAGGCTAATTGTAACGAGATCCTTGGGCTATCTAGCTACCCTGAtctagaatttcaaaatggtattttaaatacagaacaaaattattatgatCAAGTTAGTTATGCCGAATTACCCTTAGAGAATGTTGGTGAATCTTCGCTCTTGTTAGACCCAAATTCGAGTAAAATGGATAGCCTACCAgctattgaaaattatttaacacaACCCTTTTCTCCATTTCTAAACCTCTGA
- Protein Sequence
- MSINKMSDRNHQEFTSLLSAYSNQDDSMLESIDGISLENVHTVSLDYLNECMSDLESKDSGIRLSPGSPGMFPSDHRMDKFTEHDLANLDIALVKEGDLYLKSESKFEKNNVIIPRLGHEIYKTKNNLDYTQNSESILAISIENLQRNCKTCVEVCGEREDAFMKLDQIQKNTLIHDSELDKHNELCSGEFIIKAQKNNETECHKGPSKSEYSTDRDSEIEKSSDTEEPAHDCKIDDEDKSCDNKIKVELLPQACEQCPMTFKYKRHLDRHLEGHQKNNCPYCDAKFARKKHLDVHLFRLHGERITKYPHTCDICLKGFPKRLLLNRHKANHHNEKAQTCADCGDILDNSLEALKHSEKHSQERRFHCDKCPQAFSMEQKYLIHVKNHDTYKCPRCESGFASKKRANEHYRLKHSAKVPKEPETSITGMFYCNDCRHNFMTKDSYLRHLKTASHLSKMHAEIPLKALFTCTICTKQLTSRKALDQHIRRVHRDEKKYSCDTQGCEFHSTNKSDLERHRQLHIEERNIVCEHCGKTFTTISILKDHVLYVHNMERQFVCEECGKAFKRNSLLNRHKMSHQQIRPFTCEQCGAAFKRSHHLTRHMESCHRITLEKKKRVVKLMKTEDGRLVPIPEEPKKPKTKRVKSKKDSQLISYDESSASVTNRLLISKDMAELSTELSHVTPMSTIMSSESTDMSLGLANTISEVDSVPQILSLVDVNSGQVVTVEVTNPDTLPLTDLVDQFEANCNEILGLSSYPDLEFQNGILNTEQNYYDQVSYAELPLENVGESSLLLDPNSSKMDSLPAIENYLTQPFSPFLNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01049158;
- 90% Identity
- iTF_01049158;
- 80% Identity
- -