Basic Information

Insect: Neodiprion lecontei
Gene Symbol: -
Assembly: GCA_001263575.1
Location: NW:103380-107884[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.72 45 4.1 0.1 2 12 523 533 522 541 0.85

2 14 5.1e-07 3.2e-05 23.4 1.7 1 23 552 574 552 574 0.99

3 14 2.1e-05 0.0013 18.4 5.0 1 23 582 605 582 605 0.98

4 14 0.00068 0.043 13.6 0.1 1 23 617 640 617 640 0.94

5 14 0.0017 0.1 12.4 2.9 1 23 667 690 667 690 0.96

6 14 0.00044 0.027 14.2 2.3 1 23 696 718 696 718 0.96

7 14 0.019 1.2 9.1 2.9 1 23 733 755 733 755 0.94

8 14 7.6 4.8e+02 0.9 2.5 1 23 761 784 761 784 0.93

9 14 2.8e-05 0.0018 18.0 6.0 1 23 798 820 798 820 0.98

10 14 5.4e-07 3.4e-05 23.4 0.6 1 23 826 848 826 848 0.99

11 14 0.002 0.12 12.1 0.6 1 23 854 876 854 876 0.98

12 14 0.0047 0.3 11.0 3.7 1 23 882 904 882 904 0.98

13 14 2.5e-07 1.6e-05 24.4 1.2 1 23 910 932 910 932 0.99

14 14 0.00013 0.0084 15.8 2.3 1 23 938 961 938 961 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.72	45	4.1	0.1	2	12	523	533	522	541	0.85
2	14	5.1e-07	3.2e-05	23.4	1.7	1	23	552	574	552	574	0.99
3	14	2.1e-05	0.0013	18.4	5.0	1	23	582	605	582	605	0.98
4	14	0.00068	0.043	13.6	0.1	1	23	617	640	617	640	0.94
5	14	0.0017	0.1	12.4	2.9	1	23	667	690	667	690	0.96
6	14	0.00044	0.027	14.2	2.3	1	23	696	718	696	718	0.96
7	14	0.019	1.2	9.1	2.9	1	23	733	755	733	755	0.94
8	14	7.6	4.8e+02	0.9	2.5	1	23	761	784	761	784	0.93
9	14	2.8e-05	0.0018	18.0	6.0	1	23	798	820	798	820	0.98
10	14	5.4e-07	3.4e-05	23.4	0.6	1	23	826	848	826	848	0.99
11	14	0.002	0.12	12.1	0.6	1	23	854	876	854	876	0.98
12	14	0.0047	0.3	11.0	3.7	1	23	882	904	882	904	0.98
13	14	2.5e-07	1.6e-05	24.4	1.2	1	23	910	932	910	932	0.99
14	14	0.00013	0.0084	15.8	2.3	1	23	938	961	938	961	0.96

Sequence Information

Coding Sequence: ATGCTAAAACTTGTTCTTCAGACCCAGGAGGGTCAGCAGATAGAAGTAACTGTAAGCCCGGATGATACATTCGCAGACTTACAGCGACTGTACGAAAGTCCAGAAAATCCTGGCCTGTTCGAACTTCTCAAGCACCTCATTACCAGCGGGATAGACGTGGATGCGAGAACCAAAGTATTCGATTATGTTACAAACAGTAGTTCAACAGAATGGCTGGTCGAGGAATCGCTCGACGACATTAGCGGTCTACAAACAGTCGATACTTTACAAACTATAATCGAAGAGACACGGATAAAAGAATGCTGTGTAGAAGACTGTTCCAACACTAACCTGACAGCGCCGAATAAAGTCTTTTTTCCGTTGCCCACTGAGAAAGATAGattaTCTGCGTGGTTGATGGGAATAGGGAAACCAGATCTGCTCAATGTGGGAATAGAATTTTCCACCGACATCGCAGATGAACACTTTGTTTGCGCAGATCATTTTGCACCTAGTCAATTTTTAAAGGGAACTGATCAGGTACTAAAACGACGAGCCTGCCCATCGCTGACACAGATCAACATAGAGGATCGGGCAAGTTCTTTGTCAAACCAGAAGCAAGATCCGTTGTACTTAGAAACTGAAACCTCGGACAAATCACGTTTACCACAGATAATGGAAAGTAATAAGGATCTCGGTATCACAAATGCGTTTGATAGTGCAATACTAGATgagtttgacatttttaatgACGTAACTCACCCAGGTCGATTATGCAGACTATGTGGCGAGCATACCCTAGATCCTGTTTATCTCTTTTCGCCAAATGATCACAGCAACAACAAATGCACGGTGgctgataaaataaatatatgtctACCAATTAcgGTAACCGCTAAGGATCCCCTGCCGAAACAAGTATGCGCACAGTGTTTGGAGAAACTTGACACATGTCACAAACTTGCGACGACATGTCTAGAAACGGAAGACAAATTGAAATCAAtgttcgaaatgaaaaaattccacgtAAATGTAGTCAATGACAAACGATGTCCGTTATGCATTTCTGGGAATATGCAAATTGTAACCAAGAGTGGAATTTACCGCAAAGATAAAGCCGAAAGTTTTCCagagatattgaaaaattccagtGCCCGCACTAGACAAATGTCACCCTCTAAgagcaacaataataaaacggAAATTTTGAGTTCTGTTGATAGAGAACCTCTTCGGGatttctACACCGATATTCCTGCGTCGATAACACAATCGGAAGACTCGATCAAGAATGAAAATGTCCCACTAAGGTTGCCGTCGTATTTATCACAAGGTGAATTACTCTGTTCAATCTGTTCCCAAAAAGAAGACAACATTGAACAATTGACTGAGCATGCAAAGCAGCATAATGGATACCCATGCACGATTTGTGCAGATGTTAACTTTAAAACTGTAAATGAACAACAACTACACTTTCTCAGACACGGAGTTAACCGTGGATATTGCGAGACATGCTCTCTGGAATGGACGAATCCCACAGATGCTGCAGAGCATCTTAAAATCTGCAAACCCGAATTTTGGAGCCTTGAGTGTGCACATTGCGGGGAAAAATTTCCTCACATTGAAGCAGGAAACAAGCACAATTGCCAAATGTTGATAACAGAAGTGGAAGGGTTCAAATGTGATCTgtgtgggaaaaaatatatgcaaaaaattaatctaaaCATGCACATGAGGACACACGAAAAGAGAGAAGCGGTTTACTACAAGTGTTCGTTTTGTAACAAACAATTTACACGAAAAGGAAGTCTCCACAAGCATGTTTCGACGTTGCACAGTGTAGTCGAGTCGGCCACAAGTCCTAAATGTTACAAATGCCGAAAGTGTGACGAGGCTTTTGTAACCTCGGCCAGCGCCGAAGCTCACATAACAGAGAAACACTTTAGTCAATTAATGATAGCAGATGTGAGTTTTACAAGCAATCAATTCACTGcagatgaaattaatttgtcCCGAGTGTACATCTGTGAGTACTGTGAGCGTTGTTATACGATCCCTAGTTCGTTACACGACCATAGGCAGAATGAACACTACGAAAATTCTGACTATCAATGCAACATTTGTAACAGTTCGTTCGAGACCTACAAATCGTTATCACGGCACAAAACGTTACACATTAAAGAAAATGACTTGGAAGATTTAGGCATAAAGCAGTATTATCTCTGTAACTATTGCAACAAGACATTTTTACATTATGGTACCTTGATGATTCACACATCTCAACATCAACAGCCGTTACCGTATCTATGCAGGCTTTGCAACTTCCAATGTGCGACTTACAAGGAGGTGGCTGAGCATAGGAAAAATACACATCCGTATCAGTCAGTTTTGCACGAACGACccaataatttatatcactGTCAGTACTGCGAAAAATCCTTCTGCCATGAAGTAGCATTAATCAAACATATCAGAATGCATACCGGTGAGAGACCTTACAAATGTTCAATATGCGGAAAAGGCTTCTCTCAAACATCTGGTCTATATACACATCTGAAAGTTCATTCTAACCTGAGACCGTACACCTGTCCACAGTGTCCACAGACGTTCAAAATCAAAGGCGATAGGGATAATCACGTAAAAAAACATTCGGGAGATCGTCCTTACAAATGTGATTTTTGCGAAAAGGCGTTCATGACGCAGCATGTCTACAGCCAACATCGTAAAATACATACAAACGAAAGACCTTACAAATGTGATGTTTGCGGTGAGGCTTTTAGAAGGTCGCATGTACTTACAGTCCACATGAGACGTCATACCGGTGCAAAACCGCACACGTGCGACATGTGCAGTAAGGCTTACAGGCAACGCGGCGATTTattaaaacataaaaaaatccaGCACGGCGTAACGACCATCAATTCGAGTGGCGCGGTGCCTAGTTCTAGGACCGCTCTTCCGTCTTCCGGTGATATTTCGAGTAGCACGGAATCAACAACCATTTTTCCAATCGTTTGA
Protein Sequence: MLKLVLQTQEGQQIEVTVSPDDTFADLQRLYESPENPGLFELLKHLITSGIDVDARTKVFDYVTNSSSTEWLVEESLDDISGLQTVDTLQTIIEETRIKECCVEDCSNTNLTAPNKVFFPLPTEKDRLSAWLMGIGKPDLLNVGIEFSTDIADEHFVCADHFAPSQFLKGTDQVLKRRACPSLTQINIEDRASSLSNQKQDPLYLETETSDKSRLPQIMESNKDLGITNAFDSAILDEFDIFNDVTHPGRLCRLCGEHTLDPVYLFSPNDHSNNKCTVADKINICLPITVTAKDPLPKQVCAQCLEKLDTCHKLATTCLETEDKLKSMFEMKKFHVNVVNDKRCPLCISGNMQIVTKSGIYRKDKAESFPEILKNSSARTRQMSPSKSNNNKTEILSSVDREPLRDFYTDIPASITQSEDSIKNENVPLRLPSYLSQGELLCSICSQKEDNIEQLTEHAKQHNGYPCTICADVNFKTVNEQQLHFLRHGVNRGYCETCSLEWTNPTDAAEHLKICKPEFWSLECAHCGEKFPHIEAGNKHNCQMLITEVEGFKCDLCGKKYMQKINLNMHMRTHEKREAVYYKCSFCNKQFTRKGSLHKHVSTLHSVVESATSPKCYKCRKCDEAFVTSASAEAHITEKHFSQLMIADVSFTSNQFTADEINLSRVYICEYCERCYTIPSSLHDHRQNEHYENSDYQCNICNSSFETYKSLSRHKTLHIKENDLEDLGIKQYYLCNYCNKTFLHYGTLMIHTSQHQQPLPYLCRLCNFQCATYKEVAEHRKNTHPYQSVLHERPNNLYHCQYCEKSFCHEVALIKHIRMHTGERPYKCSICGKGFSQTSGLYTHLKVHSNLRPYTCPQCPQTFKIKGDRDNHVKKHSGDRPYKCDFCEKAFMTQHVYSQHRKIHTNERPYKCDVCGEAFRRSHVLTVHMRRHTGAKPHTCDMCSKAYRQRGDLLKHKKIQHGVTTINSSGAVPSSRTALPSSGDISSSTESTTIFPIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01049129;
90% Identity: iTF_01049129;
80% Identity: iTF_01049129;