Nlec005216.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neodiprion lecontei
Gene Symbol
-
Assembly
GCA_001263575.1
Location
NW:59333-66061[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.6 38 4.3 1.5 3 23 70 94 68 94 0.91
2 16 0.049 3.1 7.7 1.5 1 21 103 123 103 124 0.93
3 16 0.028 1.8 8.5 1.8 1 23 194 217 194 217 0.97
4 16 0.38 24 4.9 2.8 1 23 231 254 231 254 0.93
5 16 0.15 9.7 6.2 2.0 1 23 260 283 260 283 0.93
6 16 6.1e-05 0.0039 16.9 0.1 2 23 292 314 291 314 0.95
7 16 0.088 5.5 7.0 4.5 1 23 323 345 323 346 0.94
8 16 3.8e-06 0.00024 20.7 0.4 1 23 352 374 352 374 0.97
9 16 3.2e-05 0.002 17.8 1.0 2 23 381 402 380 402 0.97
10 16 3.6e-08 2.3e-06 27.0 2.4 1 23 407 429 407 429 0.98
11 16 8e-05 0.005 16.5 2.9 1 23 435 457 435 457 0.99
12 16 2.1e-05 0.0013 18.4 5.3 2 23 464 485 463 485 0.96
13 16 1.3e-05 0.00084 19.0 0.4 2 23 492 513 491 513 0.95
14 16 0.00059 0.037 13.8 0.1 5 23 523 542 520 542 0.88
15 16 2e-05 0.0013 18.4 1.8 2 23 553 574 552 574 0.97
16 16 0.0051 0.32 10.8 0.9 2 23 581 603 580 603 0.94

Sequence Information

Coding Sequence
ATGGCCGACGAAATCACTCCGCCGTATGAAGCAAAATCATTGAATGTCGAAAGTAAGAGTAAAGACATATCGATACGGGAGAATCCTTGTTTCACTGAAAGATATTGGGGGGAGAAAGATCCAGATCCTAATCAAGTCGAATGCTTTTTAACAAACCCCAATGAAGCTGAAAAAGATGTTAATAACGAAATCTGCAACAGATTATTGTGCCAAATATGCAATGCCATTTTTAAGGGATCATGTTCAAGACACAACCTTTTGGAACACATAAATTCGATTCATagttttgacatttttaacaAAGGTCATAGATGTCATGCTTGTAACCTGGTATTTTACACTTTGAAAGCATTTGAGACgcacaaaaatatttgtgaaaagaaatccacaagtattatttcaatcgaaacCCATTCTCTTGATGGTATCAAAGAAATTGTTGCAATAGACCATGAGAAGAGCAAATCTAATGCAAGAACTGCAGAAAGCGATGCTAAGATTAAAGAAGAAGATGGAAATGAAGATGCAAGTTTCCAAAGTGATTTCTTACCAGATGGAAGAGATGTAAAAGACAATTCTTTCAAATGCTACATCTGTTCCACCATACTTAGAACGACAAGAGATTTCACGTCACATTTGTTAAGTAGGCATAAAAGGGAAATAAGTGAATTGGAGTTTGACGATTTGTCTTACAGATGTAAGAAATGCATGTTGACATTTCCAAACTTGCTTTTGTTGCGGTCgcatttcttcaaaaaacacACTACATTGGTTATCTACAGATGTATTGTATGTCATGTTACATTGAGGtctaaaaaatctttaaaaattcatttcaacaaCGCCCATGCCCAGAAAACCAAAGAACTACAGCCATGCGATGAATGTGGGAAAGAGCTGTCAAACCTCAGAGCTCTTAAAGCTCATATTAGATTGAAACATAGTcctaataataacaaacaagGTTTTCGATGCAGGCTTTGCAAGCAGAAATTCGACTCAAAGGAGAGCAGgaAAGTTCATTACGAAGAACATCATCTGGGAGAAAGTCCGTTTGTATGCACAGATTGTGGAAAAGGATTTTCAAGCAAATCTGGCCTTTATGGACACCGTCAGCTTCATAAAACCGACAAGTCTTCCACTTGTCCATATTGTGAAAAGATATTTAACagAAGGGACAGCTACCATGAACATATACTGATCCATGTTGGACCAAAGCATCGCTGTCCACATTGCCCAAAAGAGTTTGTTCAACGCAGTAATTTAGTTCGTCACATCAGGATTCACACAGGGCAGAAGCCATACACCTGCACATTTTGTGATAAACGGTTTTCGGACAAAGGCGCGTGTAACTCTCACATTCGTGTGCACACCAAAGAAGAACAATGCGTTTGCTCATATTGCGGTCAAACATTcaccaaaaaacaaaagctcAAGTATCACATAAGAAAACACACTGGAGAGGGGTTGTTGAGCTGTGAAATATGCTCTAAATCATTCACCAATTCTTTTGCCCTAAAAGAACACAGGGCCATTCATGACAGGCAAACGCAAACCATTTGCATCGAATGTGGCAAGGCATTCAACAGCGCGAAATACTTGCAGAGGCACGTTGCTCTCGTCCATCAAGAAGCTCCACGCGCTAATATGGCTATCCGGTGTCCAGTTTGTGGCAAAGTATTTTGTCATGAAGGGAGGTTGAAATCTCATCTCGTTACCCATTTAGGAAAGAAACATTTGCAATGTTtgatttgcgaaaaacgatATAGTAGCATGAAATCTGTGCGAAATCACTTGCAGCAAAGTCATAACCTGATGCCGGATCAACCGGAATTTAGCAAGTATGTTCGTTCTGCATTTGAAAACGACCAAACGGCAATAACTCCACAACGGCTAAGCCTGCTGTGTTCTTcgagcgatgaaaaaattagttccAAGAGTTCAATAAAATTAGATCAACAACGAAGTTCTTGGAATAAGGATACGTTCACAGGAGTTGGGAATGATGGTATCAATCGAAACGAGAGGATCGTTAAGgacgaaatttctttcactcaAACTGAGGGTATCTTAAATTATAATCATCATGACAAGTTATACTGTAAAACAGAGTTGAATACTTTGGCATCCACAATCCATGCGGATAAATTTTCGCATGAAATCAAAACCGAAATTCTTGATATTCCGGAGGAAATGGTTTTGCAAGACGAAATTACACATTcgtttgctgaaaaatgttcaagtaTTGGAGAAGAACCGACGAAAGTGGGCGCCAAGATGTCTATGAATGAACAGACGTACCCGAAATGGACGCAATCAAATTTAAGTGCAATTATTGAAGAGCGTATGAAGGTAAATGAGGAGCTGTCTAGaatatgtgaaaaacaaattaatccTGTGGAAGAACAAATACCAGAAACCGAAGACATTCGTAATTACTTCCAAGAAATGGATCAAGAATCAAAATTGGATTCGAAATATTCCAAAGAGATTAATAGGAGGAGAAAACAGATGCGGACACCTAAGAAATACGTCTCAACAGTCGACACGGGCTTACttaagaataatttgaatattatcgtACCAAAACGGGAAAGAGTTGAAGCAATAGCTCGTTCGCTTAAGAAGTCAACCAATACAACATAA
Protein Sequence
MADEITPPYEAKSLNVESKSKDISIRENPCFTERYWGEKDPDPNQVECFLTNPNEAEKDVNNEICNRLLCQICNAIFKGSCSRHNLLEHINSIHSFDIFNKGHRCHACNLVFYTLKAFETHKNICEKKSTSIISIETHSLDGIKEIVAIDHEKSKSNARTAESDAKIKEEDGNEDASFQSDFLPDGRDVKDNSFKCYICSTILRTTRDFTSHLLSRHKREISELEFDDLSYRCKKCMLTFPNLLLLRSHFFKKHTTLVIYRCIVCHVTLRSKKSLKIHFNNAHAQKTKELQPCDECGKELSNLRALKAHIRLKHSPNNNKQGFRCRLCKQKFDSKESRKVHYEEHHLGESPFVCTDCGKGFSSKSGLYGHRQLHKTDKSSTCPYCEKIFNRRDSYHEHILIHVGPKHRCPHCPKEFVQRSNLVRHIRIHTGQKPYTCTFCDKRFSDKGACNSHIRVHTKEEQCVCSYCGQTFTKKQKLKYHIRKHTGEGLLSCEICSKSFTNSFALKEHRAIHDRQTQTICIECGKAFNSAKYLQRHVALVHQEAPRANMAIRCPVCGKVFCHEGRLKSHLVTHLGKKHLQCLICEKRYSSMKSVRNHLQQSHNLMPDQPEFSKYVRSAFENDQTAITPQRLSLLCSSSDEKISSKSSIKLDQQRSSWNKDTFTGVGNDGINRNERIVKDEISFTQTEGILNYNHHDKLYCKTELNTLASTIHADKFSHEIKTEILDIPEEMVLQDEITHSFAEKCSSIGEEPTKVGAKMSMNEQTYPKWTQSNLSAIIEERMKVNEELSRICEKQINPVEEQIPETEDIRNYFQEMDQESKLDSKYSKEINRRRKQMRTPKKYVSTVDTGLLKNNLNIIVPKRERVEAIARSLKKSTNTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01049107;
90% Identity
iTF_01049107;
80% Identity
-