Nlec002234.1
Basic Information
- Insect
- Neodiprion lecontei
- Gene Symbol
- -
- Assembly
- GCA_001263575.1
- Location
- NW:179724-183483[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00021 0.013 15.2 3.9 1 23 321 343 321 343 0.98 2 11 0.0016 0.1 12.4 11.5 1 23 349 371 349 371 0.96 3 11 4.9e-05 0.0031 17.2 6.6 1 23 377 399 377 399 0.99 4 11 0.00034 0.021 14.5 1.6 1 23 405 427 405 427 0.95 5 11 2.2e-06 0.00014 21.5 1.3 1 23 433 455 433 455 0.97 6 11 2.2e-05 0.0014 18.3 1.1 1 23 461 483 461 483 0.97 7 11 6.5e-05 0.0041 16.8 1.6 1 23 488 510 488 510 0.97 8 11 2e-05 0.0012 18.4 0.0 1 23 516 538 516 538 0.96 9 11 2.1e-05 0.0013 18.4 0.2 2 23 550 571 549 571 0.96 10 11 4.4e-06 0.00028 20.5 2.5 3 23 642 662 640 662 0.96 11 11 2.1e-05 0.0013 18.3 4.6 1 23 672 694 672 694 0.97
Sequence Information
- Coding Sequence
- ATGCAAATCTCACGGAGCCGTcgtctgatttttttaaattcatccgCGCGCGTTGGCGCACCAAGAGCTGAGCCAAGCCCTGCTTCCAGGATACAGGAGCGTGACGTTCTCTCGGCCTCTCCGGGCCTCAGGGAGCACTTTCTATACCCTGCAGAAATACTCGCAGTCGTGGAGTCCACCGGATCGGATAATGAATTGACGTCGAGCGAAGGGTCCGTTAGTGTCACGGTCAGCAGCGGCGACGTCTTTCCCTCCATTATCCCCTTTGGCAATATGTGCACGACGCCTGGAAATGCAGGTGCCGGATTTGGTTACCCTTGGTCATTTGGTGGGCCAGGTACTGACGCCCGTGATAACGCTCAGAGTGATTTAACTACAAACATTAGCTACGCAGTAAACAATAATCAGGATCAGGGTTCGAGTCAGAAAATTCAGGTCGACGTCAAGCCGGCTAAGTTGGCCAACAGTGCCCACCGTCGTCCGGTTTTTAATATGAATGAGAGTTGTCAACAGACTCCGACTACTCATCACGGACACACAGGAGGAGCTCACAATCAAACTCACGGGGTTCACGCTCGTGCCAAGAAGCATCACGATGTCTTCTCGATAACCTGCGACAAAGGAGGTTGTAACTGTGACGCATCCCACCCTACACCCCCCCCATCCTTATTCTCTAATCCTTTGGTATTTACCGCAGGCGATAAACACGCCATGAGTAAACATTTTATGACCCCGATCGGACCGCTCCAGCTCACGGCTGAGGAGTGTAACGAGATCCTCATGAAGCGTGCCGCAGCTGCGTCCAACCAGGCTAACGCCAACAGCGTGGCGACAAGCCAGACGGACACGACAGCCCACCTTGGGCATGTCTTCACTCACGTGAATACAGTGCAGATCGAGACCAAGGTCAAACAGCAACAGGACATGGGGAGCCAGGTTCGGGTCCCCAAAGAACGGCCCTACTCATGCTCAGAGTGCGGCAAGTCATTCCTACTGAAGCATCATCTCACTACTCATGCCAGAGTTCATACTGGGGAGAGACCCCACATTTGCCCCCACTGCGGCAAGAGCTTTGCTCACAAACACTGTTTACATACTCACCTTTTGTTGCACAGTTCCGAGCGACCTTATCAGTGTCGGGAGTGCAAAAAGTCATTCACCCTGAAGCATCACTTGGTAACTCACACCCGTGTCCACACGAGAGAGCGACCCTTCGTATGCCAGGAGTGCGGTAGGGCATTTCCATTGAAACGCCACCTAGTTACCCACAGTAAATTTCATTCTGGAGAACGACCCTTTGTATGCGAAGAATGTGGCGAGTCATTTTCACAGAAGGACCATCTCGTCATGCATTCACGTTTCCACGGCAGCTTACATCCATTCGTTTGCCACGACTGTGGTGCCACCTTCCAGAGAAAGTTTGAGCTGGTCAATCATGGGCGGTTGCACGGAAGGGTACCACACTCGTGTACGGTTTGCGGCAAAGAATTTCTTCAGAAACGTACTCTACTTGCCCACATGCGCTTGCACACTGGGGAGACTCCGTTTGCCTGCACTGTTTGCGGTGAGGCATTTCCTCGCAAAGCTGATTTGGTCGCTCACTCAAAGATACACAATAACAATACCAGTCCAGATGAGAAGCCATTGACTTGCAGgGAATGCGGATTGGAATTCTCAAATCGCGAAGCACTAACTCTGCATTTAAGGCTACATTCTGGCGATAGGACTCTGGTCACCGATCTGTGCGGGCTAGCGGCAGCGTTCCAGCAAACACCAGGTCACTTCCTAACGCCAAATACAACAGGGCCTCATCAGTATTTGCAGATGAATGGTCCTATCGGAACGCCGGGTGTTAGCCACATGCATGGGGCAACGCAGACATCCCCGCCAGTGGGTTCCGGGCCAAAACCGAAACCACATCTTTGTCCGGATTGTGGGCGCGGTTTCGCCCAAAAGCACGGGTTGTCACAGCATCAGCGCCGTCACACGGACGGTAGCTGCCACATCCGGTCCCACGTTTGCGACAAGTGCGGCAAGGCGTTCTTCCAAAAGAACCACTTGTTGCTTCATCAACGTCAACACATGGATCCTCCACCCAGTCTGCTTCGTCAGCAGCAGAGACAAGCAGCTCAGGCTGCGGCTCAGCAGGctcagcagcaacagcaacaacagcagcagcagcaacagcagcagcagcagcaggtccaacaacagcagcagcagcaagcCTGCACTGTGGACACAAAAGCAATACAGCTGCAAGCAATACAACAGCAAGTTCAGGttcagcagcaacagcagcagcagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcagcaacaacaaccgTGCACCGTTGATACGAAAGCAATACAATTGAACGTCACCATGTGA
- Protein Sequence
- MQISRSRRLIFLNSSARVGAPRAEPSPASRIQERDVLSASPGLREHFLYPAEILAVVESTGSDNELTSSEGSVSVTVSSGDVFPSIIPFGNMCTTPGNAGAGFGYPWSFGGPGTDARDNAQSDLTTNISYAVNNNQDQGSSQKIQVDVKPAKLANSAHRRPVFNMNESCQQTPTTHHGHTGGAHNQTHGVHARAKKHHDVFSITCDKGGCNCDASHPTPPPSLFSNPLVFTAGDKHAMSKHFMTPIGPLQLTAEECNEILMKRAAAASNQANANSVATSQTDTTAHLGHVFTHVNTVQIETKVKQQQDMGSQVRVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHICPHCGKSFAHKHCLHTHLLLHSSERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLVMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKADLVAHSKIHNNNTSPDEKPLTCRECGLEFSNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNTTGPHQYLQMNGPIGTPGVSHMHGATQTSPPVGSGPKPKPHLCPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSLLRQQQRQAAQAAAQQAQQQQQQQQQQQQQQQQQVQQQQQQQACTVDTKAIQLQAIQQQVQVQQQQQQQQQQQQQQQQQQQQQQQQQQQQPCTVDTKAIQLNVTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01131010;
- 90% Identity
- iTF_00174493;
- 80% Identity
- -