Basic Information

Insect: Neodiprion lecontei
Gene Symbol: -
Assembly: GCA_001263575.1
Location: NW:226223-228421[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.2e-05 0.00076 19.1 0.7 1 23 38 60 38 60 0.93

2 10 9.1e-05 0.0057 16.4 3.6 1 23 66 88 66 88 0.99

3 10 5.7e-08 3.6e-06 26.4 0.8 1 23 94 116 94 116 0.98

4 10 9.1e-05 0.0057 16.3 1.7 3 23 124 145 123 145 0.97

5 10 4.7e-06 0.0003 20.4 2.4 1 23 150 172 150 172 0.97

6 10 5.2e-06 0.00033 20.3 2.1 1 23 181 203 181 203 0.98

7 10 1e-06 6.4e-05 22.5 1.1 1 23 209 231 209 231 0.97

8 10 2e-05 0.0012 18.4 1.3 2 23 238 259 237 259 0.96

9 10 8.8e-07 5.5e-05 22.7 3.3 1 23 265 287 265 287 0.98

10 10 6.6e-06 0.00041 19.9 0.8 1 23 293 315 293 315 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.2e-05	0.00076	19.1	0.7	1	23	38	60	38	60	0.93
2	10	9.1e-05	0.0057	16.4	3.6	1	23	66	88	66	88	0.99
3	10	5.7e-08	3.6e-06	26.4	0.8	1	23	94	116	94	116	0.98
4	10	9.1e-05	0.0057	16.3	1.7	3	23	124	145	123	145	0.97
5	10	4.7e-06	0.0003	20.4	2.4	1	23	150	172	150	172	0.97
6	10	5.2e-06	0.00033	20.3	2.1	1	23	181	203	181	203	0.98
7	10	1e-06	6.4e-05	22.5	1.1	1	23	209	231	209	231	0.97
8	10	2e-05	0.0012	18.4	1.3	2	23	238	259	237	259	0.96
9	10	8.8e-07	5.5e-05	22.7	3.3	1	23	265	287	265	287	0.98
10	10	6.6e-06	0.00041	19.9	0.8	1	23	293	315	293	315	0.98

Sequence Information

Coding Sequence: ATGCAGGCCTCACGACATGGCACAGGTGCAACATTAGAAACTATAGAAATGAACCGCAAGTACGAATTATCAACTGAATGTTCAAACGATATTTGCCATTTGACGAAATCTTACCAGTGCGAGATTTGTAAGAAAACTTTTAGGTCCAAGAATTTATTTGAGGGACATTTAGTGGCTCACAGTGATGCCAGACCATACAAATGTGACATATGCTGCAAATCCTTCAAGAGAACGAACACCCTTGCAGTTCATAGGAGGATTCACACTCATGAACGTAATTTCGTATGCGATGTATGTGGTCGATCTTTCGTTCAAGCATCTCAGCTGGCAACGCATCATAGGAGgcactttgaaaaatacacaaaGTTCTGTAAAATATGCAACAAAGGCTTTTTTACTAACGCTGAACTTCACGGGCACATGAATGTTAAACATGAAGCTAATGAACATGTGTGTCAGAGTTGTGGAAAGGCCTTTCCTAACAATCATACTCTAGCACGTCACACCAAGATCCACGAGCCAAATTTTAAGCCTATAAAACACCAGTGTGAATTTTGTGGCAAAACATTCGCCTACAAGAATTCCCTTGTGCTTCACGTGAAATCCCATACTggtgataataaatttgactGCCACTTGTGCGGTAAATCAGTTTCTTCTAAAGGTTCGCTTCAAGATCATTTGCGTCTTCATGGAGGAGAGAAGTCGCTGATATGCGATGTATGCGGCAAAGCTTTTCACAAACGAACAACCCTGGTTGTTCATAAGAGAACGCACACTGGAGAAAAACCTTACAGCTGCGATACCTGTGGAAAATCTTTCACGCAGCATTCCACCCTTGTTATTCACAAACGATACCACACTGGACAAAGACCTTATCAGTGTAATTTTTGCACAAGGTCATTTGTGTCGAGGGCTCTATTGAATGCCCATAATAAAGTTCATCTTGTAAGCATAACGATAGTGCGACCCACTTAG
Protein Sequence: MQASRHGTGATLETIEMNRKYELSTECSNDICHLTKSYQCEICKKTFRSKNLFEGHLVAHSDARPYKCDICCKSFKRTNTLAVHRRIHTHERNFVCDVCGRSFVQASQLATHHRRHFEKYTKFCKICNKGFFTNAELHGHMNVKHEANEHVCQSCGKAFPNNHTLARHTKIHEPNFKPIKHQCEFCGKTFAYKNSLVLHVKSHTGDNKFDCHLCGKSVSSKGSLQDHLRLHGGEKSLICDVCGKAFHKRTTLVVHKRTHTGEKPYSCDTCGKSFTQHSTLVIHKRYHTGQRPYQCNFCTRSFVSRALLNAHNKVHLVSITIVRPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00182128;
90% Identity: iTF_01049103;
80% Identity: iTF_01049103;