Nlec008310.1
Basic Information
- Insect
- Neodiprion lecontei
- Gene Symbol
- retn_1
- Assembly
- GCA_001263575.1
- Location
- NW:250268-343750[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.23 4.1e+02 0.7 0.9 20 78 111 167 85 173 0.64 2 3 4 7.2e+03 -3.3 0.0 66 82 268 285 262 286 0.67 3 3 5.4e-26 9.7e-23 79.7 0.0 2 89 292 377 291 377 0.96
Sequence Information
- Coding Sequence
- ATGGAGATATCGGACGAGTTTCAGGAAATGGGGAATCCCGGTGGAGGAGTAGCCATGGCCAACATCGCGATCAACCATCACCACCACCCGCCCGACAGTCCGATGTCGCATCAAGAAGAGGATCTCTCGGATCCCGACCTCCAGGATGAAGAAAGTGGCGAAGAACTGCCACAGCAGCCCCTTCAAGGAAACGATCATACGTCGTCAGCGACAACGAggatttcaaataacacgCCAACTCCGCTAACGCACCTCAATAGTCTAATGAATTCGCATCACCCACATTTCCTCGCCAAGCTAAAAATGGACGTGAGTATTTCGCCCAAAAGTGTATCCTCCTCAAACCCGAGTTACTCAGATGAAAGGTTATCTCTTTTGACGAGCAAGAGATCACTAAATTCCCGCGGTACGATCAATCAAATTAACACATCATTGTCAcggcaacagcaacagcagcagcagcagcagcagcagcagcagcagcagcagcagcagctccAGCACCAGCAGCAACAGGGAGACATGGACGCCCTGTCGAACAAGAGTGGACTGGAGGCTCTGCAGGCCGCGATGAGCAGCAGCGGTTTCAATTTACCATATTCATTTCCACCCCCGGCTGCGTTCCTCGCACCTACGCACCACTCCCAGAGCCAGAACTTCGCCGCGGGTGGCACAAACAACGCGATCACCTCGTCCGCGAGCTCACACTCGAGCGAATCGTCCCAAGGAAGCGGACGAAACGGCGGGGAGTCGCGGTGCCGCGCGGAAGACGGTCATCCCCAAAACAATATTGGAACGAATCATCAGCAGCAGACCAGTTGGAGCTTCGAGGAGCAGTTCAAACAGCTGTACGAGATCAACGATGACCCGAAACGCAAGGAATTCTTGGACGATCTTTTCAGCTACATGCAAAAACGCGGAACACCGATCAATCGGTTACCCATCATGGCCAAGTCCGTTCTCGATCTCTACGAATTGTACAACCTGGTTATAGCCAGGGGTGGCCTGGTCGAcgttatcaataaaaaattatggcaGGAAATCATCAAAGGACTTCATCTTCCGTCCAGCATCACGTCGGCAGCCTTCACCTTGCGCACACAGTACATGAAGTATCTCTACCCGTACGAGTGCGAAAAGAGGCGGCTGTCAACCCCAACTGAGCTCCAGGCGGCGATCGACGGTAACCGGAGAGAAGGCCGAAGGAGCAGCTACGGGGCGTACGCGGGTGCCGGCGGACCCGGGGAATCGATGGTGCGGGCGAGTACGCATACCCCTAGCTCGTTGTCCCTGCACGCCCAAATGTCACCATTGTCCCTGGTTACGGCCGTGGCGGCCGGTGGTCAGCACCACGTGCCCCAGTCTCTGGTGAACGGAACTGGCGCCCACGCGACGATGACCCATCATCCCCATCATCCGCAACATCCGCAAGGGCCGCTTGGTCAGCCCCTCAACGCCGGACCAATGCCGGGAACGTCGGATTTCGAGGCTCGCATGGTCGAGTACGTAAAACTCTTGCAGAAGGAGCTGCACAACCCCGGTACCGGAACACCACCTCCGATGATTCACAGACAAGGAAGCGCCTCGCCACCCCCATCCCCGTCGACCCGTGAGGCTGCTCTGAACGCCCTGGAGTTGTCTCGAATGACCTTGTGGAACATTTACAACAACAACTCCCTATATCCGGGGGTTAGTCACCAGCAGTCTCACTCGCCGCCAGCTAGACATTCCCCTGTCCCGCCAGCCGCCAGTCCCGAACCGCAGAGGGAAGCTCTTGACCTGGGCCTGAGATCCTCGCCGATATCTTCACCCGCGGTAAGAAGCAGTCCTCCGGAATCCAGTGGCACGCCGGTACCGGCGAAAAGAGACCACGACGTCGAAGGGATGCTGTTAGGGGCACCGCCGGCCAAGCGATTAATGACCGAAGAAGATGCCTGTGCTTCCGACAAGGCGGTCTCCACGGGACTCGTAGGGGCACatattaaaattgacaatAGAGGAGCAGACGGACGCAGCGGTGAAAATTCGTTGGTGGTCAGCATGGAGTTGAACGGGGTAATGTATCAGGGTGTTCTTTTCGCCCAAACCGACAACACGACGCCCGGAGCTACCGCAGCAAACAAGACTAAAGACACGAAACTTACGACATTTTAA
- Protein Sequence
- MEISDEFQEMGNPGGGVAMANIAINHHHHPPDSPMSHQEEDLSDPDLQDEESGEELPQQPLQGNDHTSSATTRISNNTPTPLTHLNSLMNSHHPHFLAKLKMDVSISPKSVSSSNPSYSDERLSLLTSKRSLNSRGTINQINTSLSRQQQQQQQQQQQQQQQQQQLQHQQQQGDMDALSNKSGLEALQAAMSSSGFNLPYSFPPPAAFLAPTHHSQSQNFAAGGTNNAITSSASSHSSESSQGSGRNGGESRCRAEDGHPQNNIGTNHQQQTSWSFEEQFKQLYEINDDPKRKEFLDDLFSYMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPTELQAAIDGNRREGRRSSYGAYAGAGGPGESMVRASTHTPSSLSLHAQMSPLSLVTAVAAGGQHHVPQSLVNGTGAHATMTHHPHHPQHPQGPLGQPLNAGPMPGTSDFEARMVEYVKLLQKELHNPGTGTPPPMIHRQGSASPPPSPSTREAALNALELSRMTLWNIYNNNSLYPGVSHQQSHSPPARHSPVPPAASPEPQREALDLGLRSSPISSPAVRSSPPESSGTPVPAKRDHDVEGMLLGAPPAKRLMTEEDACASDKAVSTGLVGAHIKIDNRGADGRSGENSLVVSMELNGVMYQGVLFAQTDNTTPGATAANKTKDTKLTTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -