Ntra006034.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- -
- Assembly
- GCA_963243735.1
- Location
- OY725336.1:38118019-38120196[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.043 7.3 8.7 0.9 2 23 62 83 61 83 0.94 2 11 0.0027 0.45 12.5 2.4 1 23 91 113 91 113 0.98 3 11 0.029 4.9 9.3 3.3 1 23 138 160 138 160 0.96 4 11 0.061 10 8.2 7.7 1 23 167 189 167 189 0.99 5 11 0.054 9.2 8.4 1.7 1 23 284 306 284 306 0.97 6 11 6.9 1.2e+03 1.8 1.3 1 23 361 383 361 383 0.76 7 11 0.0039 0.65 12.0 2.9 1 23 389 411 389 411 0.98 8 11 0.00033 0.055 15.4 1.6 1 23 523 545 523 545 0.95 9 11 0.00056 0.095 14.7 3.5 1 23 551 573 551 573 0.99 10 11 0.0083 1.4 11.0 0.6 3 23 619 639 617 639 0.98 11 11 0.0088 1.5 10.9 3.8 1 23 648 670 648 670 0.97
Sequence Information
- Coding Sequence
- ATGTTTTTGAACCTATTAAAAAAACCCTCtcctaataattattttccttttcagaGACACTGCAGATTAAAACACAATGGAGATATCCGAGTAATAAGCAACAAAAACGgtcaagaaaaaattgaagtcgAAGAATTAACCGACGAACCGGACCATCTGGACATCGCCCAAAACGGCGCCCTAAAATGCAACTCCTGCCCCTTCTCCACGGACAATAACACCTACTTCGAACGACACTTGTACGGGCACGTACCTGCAGAAGACAGTGTCTTTAAATGCTTTTACTGCAAGTTCTATGTCAACAACAAAGAAGATCTTACTGACCATTTGAGGTTACATGGAATAACAGATCCTGAAGAATTTCTGAATAGGATGGCGGAGAAGAATAATAGCGATGGTGATGGGAAAAAATTTAGGTGCTTAACTTGTCCTTACGTTACAAACTCCAAATCACAGTTTACTTATCACAAACAGTTCCATAAACCAAGAGGTGGTCAATATACTTGTAGCCATTGCTCCTACAACGTCAGCAAGCGTCATTTACTCCATCAACATCTTAAAGTACACGGTATCAATGTAGCTAGTCACAAACAAAACGGGGAAGCTTTGTATCCGGAAGAACTTACAGATGAAATTGAAGAATTACCACAACTTTCGTTCACCATTGATTTACAAAATCTACCAGATATCCCTCTAGTTTGGGTatctaaaaatggaaaattctcCAAAATGTTCAAATGCAGATATTGTCCTCACGTCAATTTAAGAAAAGTTAACATCCAGGAACACGAGAAGATGCATTCTATTCGCGAAAAGAACCCAAATACTTCCAAAACCAATGAAATAGAACATCGATGTACCGAGTGCAATTACATTTGCGCCAACGCTGGTGTTTTATCATCACATTCAAAAGTACATCAAGGATTGTACGGAATCGTGCATCGTTTAGTAGATCCATCAAAAAGTGATGAGGAACAAATTAAAGAACTAAGTAGAGCCATCGGAATCCAAGAAGATGTTGAAGCTGATTCAATGGAAATTGAAGAAATAGATACGTCATCGGGAACTGGAACGATGTTGTATTTCTGTAAAGAATGTCCagctagatttttgaaagaaaatgaatttggaatccataaaaaattccATGGATCAAAGTTATACTACAAATGCGATCATTGCAGTTATACTTCACGAGAAAATTCCTATTTAGCGTCTCATTCTAAAGTACATACCAGCGATTACCAAGATAGAACCAAAGTATTACAAAGTATGTATGTTACCAGTACGAATTACCCTCAACcaaagataatagaaaaaaacggcAAGATTTTTATAGCTGCTAATGCAGAAATGAGTACTTTATGCAGTATTTTGAACAAACCTGTGAAGAGTTCCCAGAACGTGCCATTATCAGGAACAGATTTATTCCtgcaaaagcaaaaaatgaataCGGATCCAACACCGGAACGCAATTTAGATTTCAATATTACAGAATTGATGCGAGGGAATCCAGATTTTATTTATCAACCAATAATGAAGAATGGCAAATTAAAGGAGAAAAGATACAAGTGCCATATGTGTCCAACTgcttttgagaaaaaagaacaGTATAAAATCCACTTAGGATTACACGGATCGCAGCAGCGTTATAAATGCGAACATTGCGATTATTCCGTTAAATATTATGCTAATTACGTGCAACATTTAAAGAAACATAAAATGAATGCTGAAGCTCAAGCTGCGAAAAATTCCAGCGAAGACATAGACGAAGAAATTAAAGATGATGATAAAAATATGTGCGAAGAAACGGAGGATCAGGAAATTAAATGTGAAGATAAAAAGACGTTTTGGTGTTCATTTTGTCCGTATTCAAGTAGCAGGAAAGACGCCGTGGATAATCACCAGAGGCGCCATGCGTGCGTTTCCGGTAGTAATACTTATACATGCGAACACTGTGATTATTCCGTTCCTCAGAATCATTTTTTGCGGGAACATAACAAGTTACACTTCAACCGGAGTAAATCGAATCAAGTGGAGGGTTATATGTCTTGTGATGATGTTAAACTTGTGGACGAAGATGGGGTGATATTCGATGAAAATAAAGATGAAGAAAAGTTTAATAACAACGAGGGCGAGAAGAAGTTCGTAAATGTACAAACGGGTGAATTGGTCTAG
- Protein Sequence
- MFLNLLKKPSPNNYFPFQRHCRLKHNGDIRVISNKNGQEKIEVEELTDEPDHLDIAQNGALKCNSCPFSTDNNTYFERHLYGHVPAEDSVFKCFYCKFYVNNKEDLTDHLRLHGITDPEEFLNRMAEKNNSDGDGKKFRCLTCPYVTNSKSQFTYHKQFHKPRGGQYTCSHCSYNVSKRHLLHQHLKVHGINVASHKQNGEALYPEELTDEIEELPQLSFTIDLQNLPDIPLVWVSKNGKFSKMFKCRYCPHVNLRKVNIQEHEKMHSIREKNPNTSKTNEIEHRCTECNYICANAGVLSSHSKVHQGLYGIVHRLVDPSKSDEEQIKELSRAIGIQEDVEADSMEIEEIDTSSGTGTMLYFCKECPARFLKENEFGIHKKFHGSKLYYKCDHCSYTSRENSYLASHSKVHTSDYQDRTKVLQSMYVTSTNYPQPKIIEKNGKIFIAANAEMSTLCSILNKPVKSSQNVPLSGTDLFLQKQKMNTDPTPERNLDFNITELMRGNPDFIYQPIMKNGKLKEKRYKCHMCPTAFEKKEQYKIHLGLHGSQQRYKCEHCDYSVKYYANYVQHLKKHKMNAEAQAAKNSSEDIDEEIKDDDKNMCEETEDQEIKCEDKKTFWCSFCPYSSSRKDAVDNHQRRHACVSGSNTYTCEHCDYSVPQNHFLREHNKLHFNRSKSNQVEGYMSCDDVKLVDEDGVIFDENKDEEKFNNNEGEKKFVNVQTGELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -