Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: -
Assembly: GCA_963243735.1
Location: OY725347.1:3039380-3041511[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00028 0.047 15.6 0.1 3 21 238 256 236 257 0.94

2 12 0.25 42 6.3 3.2 1 23 280 302 280 302 0.98

3 12 0.089 15 7.7 0.4 3 23 309 329 307 329 0.90

4 12 0.00059 0.1 14.6 5.3 2 23 337 358 336 358 0.97

5 12 0.28 48 6.2 3.7 1 19 363 380 363 383 0.85

6 12 0.0012 0.2 13.7 3.3 1 23 392 414 392 414 0.98

7 12 1.4e-05 0.0025 19.7 1.6 1 23 420 443 420 443 0.98

8 12 0.00017 0.029 16.3 1.9 2 23 473 494 472 494 0.97

9 12 0.0001 0.017 17.0 1.6 1 23 500 522 500 522 0.99

10 12 3.9e-05 0.0066 18.3 1.5 1 23 528 550 528 550 0.97

11 12 0.0005 0.085 14.8 1.2 1 23 556 578 556 578 0.99

12 12 1.3e-05 0.0023 19.8 1.4 1 21 584 604 584 605 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00028	0.047	15.6	0.1	3	21	238	256	236	257	0.94
2	12	0.25	42	6.3	3.2	1	23	280	302	280	302	0.98
3	12	0.089	15	7.7	0.4	3	23	309	329	307	329	0.90
4	12	0.00059	0.1	14.6	5.3	2	23	337	358	336	358	0.97
5	12	0.28	48	6.2	3.7	1	19	363	380	363	383	0.85
6	12	0.0012	0.2	13.7	3.3	1	23	392	414	392	414	0.98
7	12	1.4e-05	0.0025	19.7	1.6	1	23	420	443	420	443	0.98
8	12	0.00017	0.029	16.3	1.9	2	23	473	494	472	494	0.97
9	12	0.0001	0.017	17.0	1.6	1	23	500	522	500	522	0.99
10	12	3.9e-05	0.0066	18.3	1.5	1	23	528	550	528	550	0.97
11	12	0.0005	0.085	14.8	1.2	1	23	556	578	556	578	0.99
12	12	1.3e-05	0.0023	19.8	1.4	1	21	584	604	584	605	0.95

Sequence Information

Coding Sequence: atggaTATAATTGAAGAAAAACTTATTCCTAGTTTTCCTAAAGTTTGTCGTATTTGTTTGAttgacaataatttaatccaaataaacgaagacaataatttatttaatctgTTTATtcaaattaccaaaattaaagatatacATGAAAAAGTTCCTATAAATATTTGCTTAGACTGTCTACAAGAATTAAAATCAGTGTATGAATTTATTGATGTTGTCAAATGGAAGtcgaataatcaaaaaaatgatttaagttgTATAGTGTGTTCCACAAGTGAAGACTTGACCCTATTAACTTTAACACAAAATTCTATTACTGTCTTCCaagatttcataaattttaaggtggattataacaaaaataattcagtatGTAATAAGTGTCTTAACAAGCTTCATAAAATAACAAACTTTATAACAATGTCGAAACGAAACAATAAatcatttataacaaaaaatgagtCCTTAGAAGTTTTTATAAAAGAAGAACCATCAGATGACGAATTTGTTGAAACAccaacaaaaatagaaataaaaaatgaacctattatattttcctacgaaaatttagaaacaaataaCAATCATATTATCAAAAAAGAAGCAATAGATGAAATCGAATGTAAATATGAAGACCAAAAACAGATATTAAAAGTAGAAATTGATGAAGAAGGAATACAGTATAATtgcaatgaaaaaattaaaataaattgtccattttgcaaTAAACCTTTTGATAGTGCTATAGAATTACTGAAGCATATGAAACAGAGAAGCCGTTGCCGGGTTCAAAAACGAGGGGtgatgaaaaatgttttaaagaaaGTTTCAAAGCCGTTTAAATGCCAAGTGTGCCTTACATatttttctactGTTCAAAAAAAGAAGCAACATATCAAAAACCATTTCAAAAGCACTGTAATATGCCAATATTGCgggaaaatatttctaaaacagatagaatattttaatcattttacaaTTCATGTAACAAAACAGTTACCactaaaatgtaaattttgttctaaaaaattcaagTCGAAATTCCTGTACAACAAACATTTACTAAAGCACAAAAAACGAACGTTTAAATGCAAAATATGTTTCTGTACATTTTCAAAATGGAAACTAAAGATCCATaatgaaaaagataaaaaatcttGGCAAAGACCTTTTCAATGCGCTCTTTGTTCTCGTCGCTTTACTATcaaaggaaatttgataaaacatTGCAGAACTCACAATGGTTATAAGCCGTATTCATGTAAAATATGCTTAAAGAATTTTGCTCGAACTGATTATTTGAACAAACATTTAATGACTACtcacaaaacaatttttgatcgGATATATAAGAAATATAAGACTGGTAGACCAAgaatattaaattctataaaaaaagatGAGGAAGAAGTCGAGTGCaagatttgttttaaaaaatgtgcttCCAAAACATCACTGTCTGCACACTTGCGAGTGCACAATAAAGAGAAGAAATTCAAGTGTCAAATTTGTTCCAAGACGTTTTTGTATAAAGGTCTTTTAAATGGCCACATGAAAACCCACCAAGACAACAAACCTTTCGCCTGTTCTTTATGCCCAAAAAGGTTCATCAAACGTAACGATCTCACCCGACACACTTATACCCacaccaaagaaaaaaattacaaatgtgaaatttgctacGATAAATTTTCTCGTAAAGACGTACTTCGTTTACATGTCAGAAGCCACGTAGGTCTCAGGCCCTACAAATgcgataattgtttaaaaactttCGTCCAGAAAAGCAATttgacaattcataaaaaaagatGCCTTTTGAAGTGTTTAAGCAACTAA
Protein Sequence: MDIIEEKLIPSFPKVCRICLIDNNLIQINEDNNLFNLFIQITKIKDIHEKVPINICLDCLQELKSVYEFIDVVKWKSNNQKNDLSCIVCSTSEDLTLLTLTQNSITVFQDFINFKVDYNKNNSVCNKCLNKLHKITNFITMSKRNNKSFITKNESLEVFIKEEPSDDEFVETPTKIEIKNEPIIFSYENLETNNNHIIKKEAIDEIECKYEDQKQILKVEIDEEGIQYNCNEKIKINCPFCNKPFDSAIELLKHMKQRSRCRVQKRGVMKNVLKKVSKPFKCQVCLTYFSTVQKKKQHIKNHFKSTVICQYCGKIFLKQIEYFNHFTIHVTKQLPLKCKFCSKKFKSKFLYNKHLLKHKKRTFKCKICFCTFSKWKLKIHNEKDKKSWQRPFQCALCSRRFTIKGNLIKHCRTHNGYKPYSCKICLKNFARTDYLNKHLMTTHKTIFDRIYKKYKTGRPRILNSIKKDEEEVECKICFKKCASKTSLSAHLRVHNKEKKFKCQICSKTFLYKGLLNGHMKTHQDNKPFACSLCPKRFIKRNDLTRHTYTHTKEKNYKCEICYDKFSRKDVLRLHVRSHVGLRPYKCDNCLKTFVQKSNLTIHKKRCLLKCLSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -