Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: -
Assembly: GCA_963243735.1
Location: OY725344.1:12372290-12384160[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.074 13 8.0 0.8 3 23 190 211 189 211 0.95

2 13 7.8e-05 0.013 17.4 3.1 1 23 240 262 240 262 0.98

3 13 0.0016 0.26 13.3 3.7 1 23 268 291 268 291 0.97

4 13 0.25 43 6.3 0.1 2 23 297 318 296 318 0.95

5 13 8.3 1.4e+03 1.5 2.7 3 23 390 407 389 408 0.80

6 13 6e-07 0.0001 24.0 2.7 3 23 421 441 420 441 0.99

7 13 0.0022 0.38 12.8 0.4 1 23 447 469 447 469 0.99

8 13 3.3e-05 0.0056 18.5 2.1 1 23 475 497 475 497 0.98

9 13 7.5e-07 0.00013 23.7 2.2 2 23 503 524 503 524 0.98

10 13 4.2e-06 0.00071 21.4 3.4 1 23 530 552 530 552 0.97

11 13 9.6e-08 1.6e-05 26.5 2.0 1 23 558 580 558 580 0.98

12 13 0.0017 0.3 13.1 5.5 1 23 586 608 586 608 0.97

13 13 0.17 28 6.9 0.2 1 23 617 640 617 640 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.074	13	8.0	0.8	3	23	190	211	189	211	0.95
2	13	7.8e-05	0.013	17.4	3.1	1	23	240	262	240	262	0.98
3	13	0.0016	0.26	13.3	3.7	1	23	268	291	268	291	0.97
4	13	0.25	43	6.3	0.1	2	23	297	318	296	318	0.95
5	13	8.3	1.4e+03	1.5	2.7	3	23	390	407	389	408	0.80
6	13	6e-07	0.0001	24.0	2.7	3	23	421	441	420	441	0.99
7	13	0.0022	0.38	12.8	0.4	1	23	447	469	447	469	0.99
8	13	3.3e-05	0.0056	18.5	2.1	1	23	475	497	475	497	0.98
9	13	7.5e-07	0.00013	23.7	2.2	2	23	503	524	503	524	0.98
10	13	4.2e-06	0.00071	21.4	3.4	1	23	530	552	530	552	0.97
11	13	9.6e-08	1.6e-05	26.5	2.0	1	23	558	580	558	580	0.98
12	13	0.0017	0.3	13.1	5.5	1	23	586	608	586	608	0.97
13	13	0.17	28	6.9	0.2	1	23	617	640	617	640	0.97

Sequence Information

Coding Sequence: ATGGCTAATGAAGGCATAGAAgtcaaatttaatgaattatgtagagtttgtttaacaaAAACGTACAATATGCGAGAACTTTTAAACTCTTCTGGTGAAGTTTCTGATTTAATTGGGAAATTGTCTTCGATAATAAAAGCAGAGatcAATGTGGCTGTTAATAAAACACATCCAAATTTCATATGTTTAGAATGTGAGGAGAAACTAAATTTATCGTACGATTTTCAACAAATGAGTTTAAAATCACATAAAActattttggatttaaataaaactgtCATTGATATTGATGTTAAACCTTcatatattgattttataacTTATACCccagaaaaagtaaaagaagaaGGTCCAATAGAGGAAATTTCAATAGTATATGAGAACTATGATAATGGCAAAGATGATAATTCCAGCGATGAAGATTCTGTTGAAGATCAAAAGTCTAATAagatttcacaaaataaaacagtacaATATAAGTCtactaaaaaagtatttatatgtAATGAAGATGAAGTTGCGAATTAtattaaagaagttaaaaagaAGTTTTATGCAAcaagaaattgtttattttgtgGTTTTACATCTAGTAATGTTAGAACTCTTTCTGTGCACATGTCTAGACTTCATGggAGTTATAAAGATAAATGGTGTTGGAAATGCAATAAAATGGAACATGATCTACCAGGACATGTAGAAAGTCACAAAGATGATTTTAAATGCCCTTTTTGTGGTAAACAAAGTACCACGAGTAGTCATTTTGTAGAACATCTGTCACGTCATActgTAAACCAAAAACATGTCTGCCAAATTTGCCAATATAATTTCATATCAACTGGACATTTAAGATTACATTATAAAAAAGTGcacaataagaaaatattatctTGTGAAGTGTGTTCGGAAAactttatcgaaaaaaaaatattactagatcatcttaaaattcataaaacaataaaatgcaAAACATGCGAAGagagatttttcaaagaaaaatacgACAGTCATAAGTGTTTCAAAATAGAAAGTTTACTTCAAGACtttaaagaaaatagtgaatataAAAAAGAGGATGATATTGAGAACACAAATGCAGAAAATGTTAGCAAATCAAATGAAGAAAATACAGCAGCAAAAAGcGATATCAAACCACATAGATATtgtgaaatttgtaaaagaaaagttCGAAATCTTATGAATCACGTTAATAAACATCATAATAAGGATTGTAAAAAAGATGAACCTAAAGCTCTGTGTACATACTGTGGAAAACAATTCAAacatttgTCAAATTTAGATGTCCATATGAGGACACATACAAAAGTAACACCCTATAAATGTAGCTATTGTGAAGTATCTGTAGCGACTAGAACTCGGTTAGTTGATCATGAAAGGACGCATACTGGAGAAAAACcatttgtttgtaaattttgtGGCAAAgCTTTTAAACAACATGGTGTTTTAAATACGCATTTAAAACTACACACAGGAAGAACGGAACAATGTCTTCTATGTCCAAAGAGGTTTTGCAGACCTTCAGAATTACGAAACCACATGAGAGTACATACAGGGGAGAAACCCTTTGCATGTTCTTATTGCGAAAAATGTTTCATACAAAGAAGTCATTTAGTCGAAcacataaaaattcatactgaTCATAGACCTTTCAAGTGTCATATTTGTGGTAAGGCATTTAAACAGTCTAGTACTCTAAAAGGTCATCTCAACGTTCATGAAGgaaaaaagatGTTTAAATGTACAGTATGTTCCTATAGCTGTAGAAAAAGTTATACCTTGAAACAGCATCTTTTACAACATCAAAACACAAACATGGAACAAACTTTTCAGTGTGATATATGTGAAGGAAATTTTCTAAGTTTGGAACTTTTAGCCACACATAAAAATACTCAACATCAAAGTTTGGAAATGCCTGGAAATATTACggttgatttaaaatttactgataCTTGTTTAtag
Protein Sequence: MANEGIEVKFNELCRVCLTKTYNMRELLNSSGEVSDLIGKLSSIIKAEINVAVNKTHPNFICLECEEKLNLSYDFQQMSLKSHKTILDLNKTVIDIDVKPSYIDFITYTPEKVKEEGPIEEISIVYENYDNGKDDNSSDEDSVEDQKSNKISQNKTVQYKSTKKVFICNEDEVANYIKEVKKKFYATRNCLFCGFTSSNVRTLSVHMSRLHGSYKDKWCWKCNKMEHDLPGHVESHKDDFKCPFCGKQSTTSSHFVEHLSRHTVNQKHVCQICQYNFISTGHLRLHYKKVHNKKILSCEVCSENFIEKKILLDHLKIHKTIKCKTCEERFFKEKYDSHKCFKIESLLQDFKENSEYKKEDDIENTNAENVSKSNEENTAAKSDIKPHRYCEICKRKVRNLMNHVNKHHNKDCKKDEPKALCTYCGKQFKHLSNLDVHMRTHTKVTPYKCSYCEVSVATRTRLVDHERTHTGEKPFVCKFCGKAFKQHGVLNTHLKLHTGRTEQCLLCPKRFCRPSELRNHMRVHTGEKPFACSYCEKCFIQRSHLVEHIKIHTDHRPFKCHICGKAFKQSSTLKGHLNVHEGKKMFKCTVCSYSCRKSYTLKQHLLQHQNTNMEQTFQCDICEGNFLSLELLATHKNTQHQSLEMPGNITVDLKFTDTCL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -