Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: -
Assembly: GCA_963243735.1
Location: OY725342.1:25551672-25553201[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0041 0.7 11.9 0.3 1 23 12 35 12 35 0.91

2 18 0.03 5 9.2 0.3 2 23 39 61 38 61 0.91

3 18 0.03 5 9.2 0.3 2 23 65 87 64 87 0.91

4 18 0.0032 0.55 12.3 0.9 2 23 91 113 90 113 0.96

5 18 0.00092 0.16 14.0 0.6 1 19 119 137 119 137 0.97

6 18 0.00033 0.057 15.4 1.9 2 23 146 168 145 168 0.95

7 18 0.0098 1.7 10.7 0.2 2 22 172 192 171 194 0.90

8 18 3.6e-05 0.0062 18.4 3.9 1 23 200 223 200 223 0.97

9 18 0.0054 0.92 11.6 0.8 2 23 227 249 226 249 0.93

10 18 1.1 1.8e+02 4.4 0.2 7 23 261 278 261 278 0.85

11 18 0.14 23 7.2 0.4 2 23 282 304 281 304 0.92

12 18 0.48 82 5.4 0.3 5 23 314 333 313 333 0.88

13 18 0.01 1.7 10.7 0.8 2 23 337 359 336 359 0.92

14 18 0.012 2 10.5 0.2 5 19 369 383 368 386 0.92

15 18 0.01 1.7 10.7 0.8 2 23 392 414 391 414 0.92

16 18 0.00025 0.043 15.8 2.3 1 20 420 439 420 443 0.89

17 18 0.086 15 7.8 1.1 2 23 447 469 446 469 0.94

18 18 0.009 1.5 10.9 1.3 1 19 475 493 475 498 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0041	0.7	11.9	0.3	1	23	12	35	12	35	0.91
2	18	0.03	5	9.2	0.3	2	23	39	61	38	61	0.91
3	18	0.03	5	9.2	0.3	2	23	65	87	64	87	0.91
4	18	0.0032	0.55	12.3	0.9	2	23	91	113	90	113	0.96
5	18	0.00092	0.16	14.0	0.6	1	19	119	137	119	137	0.97
6	18	0.00033	0.057	15.4	1.9	2	23	146	168	145	168	0.95
7	18	0.0098	1.7	10.7	0.2	2	22	172	192	171	194	0.90
8	18	3.6e-05	0.0062	18.4	3.9	1	23	200	223	200	223	0.97
9	18	0.0054	0.92	11.6	0.8	2	23	227	249	226	249	0.93
10	18	1.1	1.8e+02	4.4	0.2	7	23	261	278	261	278	0.85
11	18	0.14	23	7.2	0.4	2	23	282	304	281	304	0.92
12	18	0.48	82	5.4	0.3	5	23	314	333	313	333	0.88
13	18	0.01	1.7	10.7	0.8	2	23	337	359	336	359	0.92
14	18	0.012	2	10.5	0.2	5	19	369	383	368	386	0.92
15	18	0.01	1.7	10.7	0.8	2	23	392	414	391	414	0.92
16	18	0.00025	0.043	15.8	2.3	1	20	420	439	420	443	0.89
17	18	0.086	15	7.8	1.1	2	23	447	469	446	469	0.94
18	18	0.009	1.5	10.9	1.3	1	19	475	493	475	498	0.89

Sequence Information

Coding Sequence: ATGGAGCAACACAGAAATGCTGTACATAAAGGTTTTGAATGTGATTATTGTAGAAAAGTTTTTAAAGCTGAGAAAGATATTGAGCAGCATAGAAGTGCTGTTCATAATGGTGTAGAatgtaattattgtaaaaaactttttaaagcaGAAAAAGATATGGAGCAGCATAGAAGTGCTGTTCATAATGGTGTAGAatgtaattattgtaaaaaactttttaaagcaGAAAAAGATATGGAGCAACATAGAAGTGCTGTTCATAATGGTGTTGAAtgttattattgtaaaaaaaaatttaaagctgAAAAAGATATGGAACAGCATAGAAATTCTGTACATAAgggttttgactattttccttGTAATAAGTGTGATGAAACTTTTGATACTAAACAAAAACTGGAAGAGCATGATTACGATAAACATTTGGCTGTTAGATGTAATTACTGTAACAAAACATTTAAAGCTGAGGAACATATGGAGCAGCATAGAAAAGAAGTACATAAGGGTGTTGAATGTGATTACTgttacaaactttttaaaactgaGATATATATGAAACAGCATATGGGTGATGTACACAAGAACATTGATTATTTCACTTGTTCTAATTGTGACGAAACTTTTGATaccaaaaaaaacctaaatcaGCATAACTGCACTGaacatttaactattaaatGTAATTACTGTGACACATattttaaagatgaaaattttatggAGCAACATAGGAATGATGTACATAAGAATGTTGATTATTTCGCTTCTTCTAATTATGACGAAACTTTTGATACCAGAAAAAACCTAAATCAGCATAACTACAGTGAACATTTAACCATTAAATGTAATTACTGTGACACATATGTtaaagatgaaaattttatggAGCAACATAGGAATGATGTACATAAGAATGTTGATTATTTCGCTTCTTCTAATTGTGACGAAACTGTTGATACCAAAAAAGACCTAAATCAGCATAATTACAGTAAACATTTAACCATTAAATGTAATTACTGTGACACATattttaaagatgaaaattttatggAGCAACATAAGAATGATGTACATAAGAATGTTGATTATTTCGCTTCTTCTAATTGTGACGAAacttttgatacaaaaaaaaacctaaatcaGCATAATTCCAGTGaaaatttaactattaaatGCAATTACTGTGACACATattttaaagatgaaaattttatggAGCAACATAAGAACGATGTACATAAGAATGTTGATTATTTTGCTTGTTCTGATTGtgataaaacttttaatatcaaaaaacaccTAAACCAGCATGAATATGATCAACATTTGAGCATTAAATGTAATTACTGTGAGATTTATTTTAAAGGTGAAATGCTTATGGAGCATCATAAGAGCACTGTACATAAAGATGTTGATTATTTTCTATGTGTTAAGTGTAATGAAACTTTTGATactaaacaaaaactaaaacaacATGATCGTGATGAACACTTGAATGATAAATGTTATTGCTGTGTTATACTTTAA
Protein Sequence: MEQHRNAVHKGFECDYCRKVFKAEKDIEQHRSAVHNGVECNYCKKLFKAEKDMEQHRSAVHNGVECNYCKKLFKAEKDMEQHRSAVHNGVECYYCKKKFKAEKDMEQHRNSVHKGFDYFPCNKCDETFDTKQKLEEHDYDKHLAVRCNYCNKTFKAEEHMEQHRKEVHKGVECDYCYKLFKTEIYMKQHMGDVHKNIDYFTCSNCDETFDTKKNLNQHNCTEHLTIKCNYCDTYFKDENFMEQHRNDVHKNVDYFASSNYDETFDTRKNLNQHNYSEHLTIKCNYCDTYVKDENFMEQHRNDVHKNVDYFASSNCDETVDTKKDLNQHNYSKHLTIKCNYCDTYFKDENFMEQHKNDVHKNVDYFASSNCDETFDTKKNLNQHNSSENLTIKCNYCDTYFKDENFMEQHKNDVHKNVDYFACSDCDKTFNIKKHLNQHEYDQHLSIKCNYCEIYFKGEMLMEHHKSTVHKDVDYFLCVKCNETFDTKQKLKQHDRDEHLNDKCYCCVIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -