Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: -
Assembly: GCA_963243735.1
Location: OY725338.1:20799556-20824322[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.8e-06 0.0013 20.5 1.7 1 23 1207 1229 1207 1229 0.98

2 9 7.5e-08 1.3e-05 26.9 1.6 3 23 1237 1257 1235 1257 0.98

3 9 0.00058 0.098 14.6 0.4 1 23 1263 1285 1263 1285 0.98

4 9 4.5e-06 0.00076 21.3 1.1 1 23 1291 1313 1291 1313 0.99

5 9 5.6e-05 0.0095 17.8 1.7 2 23 1426 1447 1425 1447 0.96

6 9 7.3e-09 1.2e-06 30.0 1.6 1 23 1453 1475 1453 1475 0.98

7 9 0.0016 0.28 13.2 0.6 3 23 1483 1503 1481 1503 0.97

8 9 0.00036 0.061 15.3 0.8 1 23 1509 1531 1509 1531 0.99

9 9 0.049 8.3 8.6 0.8 1 23 1537 1561 1537 1561 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.8e-06	0.0013	20.5	1.7	1	23	1207	1229	1207	1229	0.98
2	9	7.5e-08	1.3e-05	26.9	1.6	3	23	1237	1257	1235	1257	0.98
3	9	0.00058	0.098	14.6	0.4	1	23	1263	1285	1263	1285	0.98
4	9	4.5e-06	0.00076	21.3	1.1	1	23	1291	1313	1291	1313	0.99
5	9	5.6e-05	0.0095	17.8	1.7	2	23	1426	1447	1425	1447	0.96
6	9	7.3e-09	1.2e-06	30.0	1.6	1	23	1453	1475	1453	1475	0.98
7	9	0.0016	0.28	13.2	0.6	3	23	1483	1503	1481	1503	0.97
8	9	0.00036	0.061	15.3	0.8	1	23	1509	1531	1509	1531	0.99
9	9	0.049	8.3	8.6	0.8	1	23	1537	1561	1537	1561	0.95

Sequence Information

Coding Sequence: ATGCAGTATCATGCAGTACGTATGCAGTACTATGCAGTACATATGCAGTATCATGCAGTACGTATGCAGTGCTATGCAGTACTATGCAGTACGTATGCAGTATGTATGCAGTATTATGCAGTACTCTGCAGTACTCTGCAGTACACGTTATATCCGATCTTATTTAGCAAAATGGATAAATCTGTTTCTGACACCATTGAAAGAGATGacattggaaaaattattgacgAAGTTAAAGAGTTTGAAGATTTTATATTCCCAGATTACTTAAAAACGTTGTTTCTCTATACAGGTTTTGATAATATTCATTCAATAGCAGCTTTTGATGAATCGTCTATGTTAGAGCTAGAACGATTTGCTCGGGAAGACTTGCCTAGTTTATTAGATAAACAGGaagttaacattttttatggTATATACGCAAAGATACAAAatcataataaagaaaatatatccaTTTTGTCAAGTACAAAGGAAATAATCATCAATGTCAGCGAAGCTGATCCTAACTCTGCGAAAATAAAATGTCCTCTATGTTCCATGTTCCTACGGATTACCAATACTGAACGAAAGTATGGAACTCATTGggtgttttccaattttaacaaacacttaaaaaatcatCTTGCGCTTAAACAAAAACAAGTGCAAAAAACCATAATACAGAAGAATTCTAGTATTTTATCTTTCCTTATTAATCAACAACCTATTCAGACTGATGAAATTTCTTTACTAGAAGAAGACCAGATAGAGGAGGTACAAGAATTAAGATTACAACCACTACAACCTATTCAGACTGATGAAATTTCTTTACTAGAAGAAGACCAGATAGAGGAGGTACAAGAATTAGGATTACAACCACTACAACCTGTTCAGACTGATGAAACTTTACTAGATAAAGGTCAGATAGAAAAGGTACAGGAATTAAGATTAAACCCACTAGAAAGAGTAAATAAAACTGATGAAAATCAAGATACAAACCGAGATGAAAACACTCACGGTATGGCAGATAATTTAGATGAGGTTGAGGATTTTGTAGACAGCAGAATTATAAATGAGGCTGATAATTCTGCTGTTTGTGTACTAGAGCCTCCAAAAGGAGTAAAGTACAGCCAAAGAAGTTTGcgcattcaaaatatattaagagCTGCTGGTGCAAATCAAAATCAAACTAAATTAACAGACTACTATGAAATCTTAAATGCAGTAGAAAAAGTAATAGATGAAAATCCCCAAGTTAgatcaagttttaataattcaataaaatattcctCTATTAAAGATAATGCAACTACATCTATAGGCTTATTACAAGCACTCTTAAAAGCTGCCGAAAATAATAGCCGATGCAATACACAGAGGTATAGATTTTCTGAACCTCTAAAACTCTttggtatttatatttttatgattggGGGTCGATTGCTTTACGAAACTTTATATTCAAACTTAGCACAATCACTTCCTTCTATATCTACACTCATGAGAACATTAGATAATCATCCAAAAATATCCGAAGGAGTTGTTAGGTTTACAGAGTTAAAGGAGTACCTTACAAAAAGGAATTATCCTATGGCCATTTTTGTGAGTGAAGATCAGACTGCTATTTTGAAGAGAGTAAATTAcgattcaaatttgaataaacttGTGGGATTCTTGTTGCCTCTATGTAAAAAGAAAGGGTTTCCATTAACTAACAAATTTTACGTTAATTCTGTTAATGATATTTCACATGCCTTTATGAACGAGACAATTTGCAATAATGCTTTTGTCTTTGCCGCACAACCATTGATGGATAAATCACCTGCTTTCTGTTTATCAATTTATGGAAGTGGTAATGTATTTGAGCATACCGATGTATTGAAACGTTGGCAATATTTAATAGCTGAAAGTAAGAAACAAGGGATTGAAATTATCGGGTTTTCTTCTGACGGTGACACCAGATGTTTGAaagcaatgaaaatatttactgGTTTACCCTCAGGTTTAGCAGCTCAAGAATGTGTAACAAGAAATACCAAAATCCCTTTTAGAATTAACCAAAATGTTGAAGACCATGACGAACAGCCTACTGATAATTTAAACATCAATCATGATGACGATGTTAAAGGATCAGTATATGGAACAGTGTCACCTGAAGCTACATTCGAAGAAGTAGTATCTAGTATTTCTGGAAATACCATGTACAGTCCTTATTTTCAGgcAAAATTTGACATAACCCAACCAACTTGCTTTCAAGATACTGTCCATAttggtacaaaattaaaaaccagGTTATTGAAAGAGAATATTAATCTACCTATGGGCGAGCTATTTGTTTCCCGTAATCATATTGAGGAGCTAATAAAAACATATTCCAAAGACCAACATTTTTTGTGCCCCAGTCATTTAAATGgtaaagaCAAAATGAATTTCGACGCTATCGACAAGTTATCTAATATGCGAGTCATTGATTTATTGGATAAAATACCAGATAGTTCAGCTACTAAGCATAACCAACcatgtgaaaaaatttttcgacaaaCTCGATCAATGACCAGTACGTTTTCTACGATGGTGAATTATTCCTTACTAGACATTATGAAGAGGTTGAATAGAATACAGGCAATAAATGAGATAAGTTCAGATCTAGataCAACTTTTCGATTTCCTCGAGAAGAAAACAAGAAGCTCGGAATAAATGACATAAATAATCAGTTGCCTTTACCAACTGTTACCGAAattttggagattttaaaaaaggcCAAAGAAGATGCCATAGAATCGGCAACAAAAATTGGTATGATGCTTAATTCCAATAAGAGCACTGATAAATCTTCAGCTGAGCATGAGGCCGAATGGAAAGAGCAGGCCTGTTTAacgattttaattaaacattctcgtaaagaagaagaagaagaagaaaacgaaAGTACAGATGATGAAATAGACTGTCAAGATGATATCGGAACACAAGAAATATCTGATACAGAGGAAGATTCTCTAATAAAGAAGGATATAGAATTACTAAatacAGCCGCTCCATACGTCCTCTATAAAGATGGTATGGATAGAGTACAGAGCCAGTGGGGGCCCCAAGACGCTTATCCGCCCCCACAGCAATCAACAACAGCCGGAGCAGGTAGTCCACAACAGGCTCTTGGTCCGACCGTCCCATTGGGTGTCGAGGCAGACACAGTACCCGCAAGAGACCAAAGTCTTCCGTCACCCGCACCATCTCCTTATCCAGCCACTCAAGCTGAACAGAGAGAAGAAGAAATACAACCAGATCAACCTACCATGGATATGGAACCTCGGCCTGCGTCGCAATGCTTTCCGACAGATTTACAACAACAGCAACAGCAGCAAGCGTATCAACAGTATGCTAGAGCACCACCACCGGCAGCGCCGCCTCCTGTACCACCTCACATGCTGGGAGCGGGTAGTTTTTCagctttacaatatttaaaacaaccCGGAGTAATGCTAACAAGTTTAGGAGCTGATACTAGTGGGCAATTGGACCAGTACGCGTCTAATATGCAGGATCTACGTACAGCTTCGTTGCCCGATGTCATTCAGCATCAACATGCTGGATTAAAGAAAACACCGAACGGATTAAACGGGGAATTAAGGTTATTCAAATGTTTGACGTGTGGAAAAGACTTCAAACAGAAGTCGACGTTGCTGCAACACGAAAGGATCCATACGGACAGTAGACCATATGGGTGTCCGGAATGCGGGAAGAGGTTCCGTCAACAGAGCCACCTGACGCAACACCTGAGAATTCATGCCAACGAGAAGCCTTACGCATGCGTCTATTGCGAACGGACGTTTAGACAGAGAGCCATTTTGAATCAACATCTGCGTATCCATTCCGGTGAGAAGCCATATGAGTGCCCGGAGTGCGGGAAACACTTCCGGCAGAAGGCTATCCTCAACCAGCACGTCCGCACACACCAAGATGTCAGTCCACATTTGGTATTCAAAAACGGTATCAATCCAACGCTCTGGCCTCAAGACGTTCCGTTTCCTCCAGATGAAGGTAAAGAAGAGGTTCAATCCACGTATGGGGATGGAGAAAACTCCGATAGAGCCTCTTGTTTTTCGCCCAACGGCATCGCTGGTAGCCTTCAATACCCGGCATACTTCAAAGATGCCAAAGGAATGAACCACGCCGTTTTCGGAGGTGGCACTAACTTTGGAGCTTTGCAATACTTGAAGCAGCAACAACCAGGGAAAGGTTTACCGGATGTGATACAACATGGCAGATCTGCAGGTATGCCGCTCTATGTACGCTGCCCCATATGCCAAAAAGAATTcaaacagaaatctaccttaTTGCAACATGGCTGTATACATATCGAATCGAGGCCGTACCCATGTCCGGAGTGCGGTAAGAGGTTCAGACAACAGTCGCATTTGACTCAACACTTGAGAATACACACGAACGAAAAACCTTATGGCTGTGTCTACTGCGGGAGGAACTTTAGACAAAGAACTATTCTTAATCAACATTTGAGGATTCACACGGGAGAGAAACCTTACAAATGCGCCCAGTGCGGTAAGGATTTTAGACAAAAGGCGATATTAGATCAGCACACGAGGACACACCAAGGCGACAGACCGTTCTGTTGTCCGATGCCGAATTGTCGGAGGAGGTTCGCTACAGAACCGGAAGTAAAAAAACACATTGATAATCACATGAACCCACACGCGGCCAAAACAAGAAGAGACTCAACTGGTTCAGATGGAAAGTTACCGGGAAATGGTATGTTACCGAGAGGCTTAACACCCACGACAGTCGTTAAGCCCGAGCTCTATTTCCCCCAATGCTACGCGCCTAGCTTCAACCCGCCTAGTAGCGTCTCGCAGTTTCAAACTCCTAATCCCGAGTTTAAACCACCTAATCCGCTACCGGCCCAGTGA
Protein Sequence: MQYHAVRMQYYAVHMQYHAVRMQCYAVLCSTYAVCMQYYAVLCSTLQYTLYPILFSKMDKSVSDTIERDDIGKIIDEVKEFEDFIFPDYLKTLFLYTGFDNIHSIAAFDESSMLELERFAREDLPSLLDKQEVNIFYGIYAKIQNHNKENISILSSTKEIIINVSEADPNSAKIKCPLCSMFLRITNTERKYGTHWVFSNFNKHLKNHLALKQKQVQKTIIQKNSSILSFLINQQPIQTDEISLLEEDQIEEVQELRLQPLQPIQTDEISLLEEDQIEEVQELGLQPLQPVQTDETLLDKGQIEKVQELRLNPLERVNKTDENQDTNRDENTHGMADNLDEVEDFVDSRIINEADNSAVCVLEPPKGVKYSQRSLRIQNILRAAGANQNQTKLTDYYEILNAVEKVIDENPQVRSSFNNSIKYSSIKDNATTSIGLLQALLKAAENNSRCNTQRYRFSEPLKLFGIYIFMIGGRLLYETLYSNLAQSLPSISTLMRTLDNHPKISEGVVRFTELKEYLTKRNYPMAIFVSEDQTAILKRVNYDSNLNKLVGFLLPLCKKKGFPLTNKFYVNSVNDISHAFMNETICNNAFVFAAQPLMDKSPAFCLSIYGSGNVFEHTDVLKRWQYLIAESKKQGIEIIGFSSDGDTRCLKAMKIFTGLPSGLAAQECVTRNTKIPFRINQNVEDHDEQPTDNLNINHDDDVKGSVYGTVSPEATFEEVVSSISGNTMYSPYFQAKFDITQPTCFQDTVHIGTKLKTRLLKENINLPMGELFVSRNHIEELIKTYSKDQHFLCPSHLNGKDKMNFDAIDKLSNMRVIDLLDKIPDSSATKHNQPCEKIFRQTRSMTSTFSTMVNYSLLDIMKRLNRIQAINEISSDLDTTFRFPREENKKLGINDINNQLPLPTVTEILEILKKAKEDAIESATKIGMMLNSNKSTDKSSAEHEAEWKEQACLTILIKHSRKEEEEEENESTDDEIDCQDDIGTQEISDTEEDSLIKKDIELLNTAAPYVLYKDGMDRVQSQWGPQDAYPPPQQSTTAGAGSPQQALGPTVPLGVEADTVPARDQSLPSPAPSPYPATQAEQREEEIQPDQPTMDMEPRPASQCFPTDLQQQQQQQAYQQYARAPPPAAPPPVPPHMLGAGSFSALQYLKQPGVMLTSLGADTSGQLDQYASNMQDLRTASLPDVIQHQHAGLKKTPNGLNGELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYECPECGKHFRQKAILNQHVRTHQDVSPHLVFKNGINPTLWPQDVPFPPDEGKEEVQSTYGDGENSDRASCFSPNGIAGSLQYPAYFKDAKGMNHAVFGGGTNFGALQYLKQQQPGKGLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCAQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKTRRDSTGSDGKLPGNGMLPRGLTPTTVVKPELYFPQCYAPSFNPPSSVSQFQTPNPEFKPPNPLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -