Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: -
Assembly: GCA_963243735.1
Location: OY725341.1:7746764-7749427[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.6e-05 0.0078 18.1 1.6 2 23 135 156 134 156 0.96

2 12 1.5 2.6e+02 3.9 4.7 2 21 161 180 160 183 0.94

3 12 1.4e-06 0.00024 22.8 3.9 1 23 189 211 189 211 0.98

4 12 0.007 1.2 11.2 3.0 3 23 219 239 217 239 0.95

5 12 4.2e-05 0.0071 18.2 2.7 2 23 246 267 245 267 0.96

6 12 1.5e-05 0.0025 19.6 1.9 1 23 273 295 273 295 0.99

7 12 1e-05 0.0017 20.1 0.3 1 23 301 323 301 323 0.99

8 12 0.017 2.9 10.0 3.5 1 23 329 351 329 351 0.98

9 12 6.4e-08 1.1e-05 27.1 0.6 1 23 357 379 357 379 0.99

10 12 2e-07 3.4e-05 25.5 0.8 1 23 385 407 385 407 0.99

11 12 0.00023 0.039 15.9 2.1 1 23 413 435 413 435 0.98

12 12 2e-05 0.0034 19.2 1.1 1 23 441 463 441 463 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.6e-05	0.0078	18.1	1.6	2	23	135	156	134	156	0.96
2	12	1.5	2.6e+02	3.9	4.7	2	21	161	180	160	183	0.94
3	12	1.4e-06	0.00024	22.8	3.9	1	23	189	211	189	211	0.98
4	12	0.007	1.2	11.2	3.0	3	23	219	239	217	239	0.95
5	12	4.2e-05	0.0071	18.2	2.7	2	23	246	267	245	267	0.96
6	12	1.5e-05	0.0025	19.6	1.9	1	23	273	295	273	295	0.99
7	12	1e-05	0.0017	20.1	0.3	1	23	301	323	301	323	0.99
8	12	0.017	2.9	10.0	3.5	1	23	329	351	329	351	0.98
9	12	6.4e-08	1.1e-05	27.1	0.6	1	23	357	379	357	379	0.99
10	12	2e-07	3.4e-05	25.5	0.8	1	23	385	407	385	407	0.99
11	12	0.00023	0.039	15.9	2.1	1	23	413	435	413	435	0.98
12	12	2e-05	0.0034	19.2	1.1	1	23	441	463	441	463	0.98

Sequence Information

Coding Sequence: atgaCGGAAACAATTATATTATTGGACAGATTATGTCGAACAtgtttatcagaaaaaaatccagAGGAGTTAAGATCACTTTATGATAATATCATAAATCaagaattttatgaaatttcgtCAGTAAaggTCGAACAAAATGATGGTTTGCCATCAGGAATATGTAACGATTGTTACTATACcttaaatatatcaataaattttaaaaatcagtgTCAAAAATCcgatatacatttaaaaaatatcttattccCGGATCCAccgattatttataaaacaattactATATTAGATAATATATCAGAAATACAAGATCAAAATATTCCCGAAAATAAATTACAGGTAGAACATATTAGCACTGTAATAAAATACAatccaaaaataactaataatgatAATTTAGAATGTACTGAATGTAATaaggaatttaaatttgaaagtaCTTTCAAATCGCATATGGTACggcatggaaaaaaattaaaatgtgaagtTTGCCATCAAGAATTTAATattatgaaAACTTATAATTATCATATGCGATGCAAACATCCGGATTTTCGTCCTCATAAATGCAAACAATGcggaaaatgttttaataatattccaGCTTTAATGAAGCACATGAGGATCCATGGTGGAGAACGGAAACATTTATGTAATGTTTGTGGCAAACGATTTTTCGAACATAATCTTTTATTAatccATTCTAGAATCCATACGGGGGAGAAACCATTGAGTTGTAATACTTGTGGCAAAAAATTTACCAATCGTCATGGATTAATAACtcataataaaattcatacAGGAGAGAAAAAATATCAGTGTAATATTTGTGATCAAAGATTTGCTCATTCTTTTGTACTGAAAGCCCACAAAAGAATCCATACAGGCGAAAAACCGtttaaatgtaatatttgtGACGCTTCTCTGGGATCTTCATCTTATTTGAAAATTCACCAAAGAATACATAGTCAAGAAAAACCTTACAAATGTGATAAGTGTCTTAAGgctTTTGTGTGCAAAAGTAGTTTAGATTCACATAAAAAGGTTCATACGGGTGAAAAACTTTATCAATGTTCGATTTGTGGAAAGACAACTGGAAGATCTACTGATTTGCAGATTCACATGAGGACTCATACAggtGAAAAACCCTACTCTTGCGACCAATGCGACAAACGTTATGTAACCTCCAGTAACCTAGCCGCCCATAAGCGTACCCATTTGGGTACAAAAAACTACGTTTGTTCGACTTGCGGCAAAGCTTTCGGGGATTCCCGTACGCTAAAATGCCACTATAGGATCCATACCGGGGAAAAACCGTACATTTGTAACGTTTGCGGTAACTGTTATTCTCAATCCGGTCAATTGTCTGTTCATAAGAggatacataaaaataatgaaagtcaAGAACGGTTACTTGTAACTAATATGAATCATTACAGTTAG
Protein Sequence: MTETIILLDRLCRTCLSEKNPEELRSLYDNIINQEFYEISSVKVEQNDGLPSGICNDCYYTLNISINFKNQCQKSDIHLKNILFPDPPIIYKTITILDNISEIQDQNIPENKLQVEHISTVIKYNPKITNNDNLECTECNKEFKFESTFKSHMVRHGKKLKCEVCHQEFNIMKTYNYHMRCKHPDFRPHKCKQCGKCFNNIPALMKHMRIHGGERKHLCNVCGKRFFEHNLLLIHSRIHTGEKPLSCNTCGKKFTNRHGLITHNKIHTGEKKYQCNICDQRFAHSFVLKAHKRIHTGEKPFKCNICDASLGSSSYLKIHQRIHSQEKPYKCDKCLKAFVCKSSLDSHKKVHTGEKLYQCSICGKTTGRSTDLQIHMRTHTGEKPYSCDQCDKRYVTSSNLAAHKRTHLGTKNYVCSTCGKAFGDSRTLKCHYRIHTGEKPYICNVCGNCYSQSGQLSVHKRIHKNNESQERLLVTNMNHYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -