Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: -
Assembly: GCA_963243735.1
Location: OY725346.1:7960537-7963384[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.5e-05 0.0043 18.9 0.6 3 23 160 180 158 180 0.96

2 11 0.026 4.5 9.4 0.8 1 21 213 233 213 235 0.94

3 11 4.1e-06 0.00069 21.4 4.6 2 23 243 265 242 265 0.97

4 11 1.6e-07 2.7e-05 25.8 2.5 1 23 271 293 271 293 0.99

5 11 0.00012 0.021 16.7 3.6 1 23 299 321 299 321 0.97

6 11 2.8e-05 0.0047 18.8 0.7 1 23 327 349 327 349 0.94

7 11 0.0002 0.033 16.1 0.7 3 23 357 377 355 377 0.96

8 11 2.8e-06 0.00048 21.9 3.0 1 23 383 405 383 405 0.98

9 11 0.00017 0.028 16.3 1.3 1 23 411 433 411 433 0.99

10 11 1.6e-06 0.00027 22.7 2.9 1 23 439 461 439 461 0.99

11 11 3.3e-07 5.6e-05 24.8 0.7 1 23 467 489 467 489 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.5e-05	0.0043	18.9	0.6	3	23	160	180	158	180	0.96
2	11	0.026	4.5	9.4	0.8	1	21	213	233	213	235	0.94
3	11	4.1e-06	0.00069	21.4	4.6	2	23	243	265	242	265	0.97
4	11	1.6e-07	2.7e-05	25.8	2.5	1	23	271	293	271	293	0.99
5	11	0.00012	0.021	16.7	3.6	1	23	299	321	299	321	0.97
6	11	2.8e-05	0.0047	18.8	0.7	1	23	327	349	327	349	0.94
7	11	0.0002	0.033	16.1	0.7	3	23	357	377	355	377	0.96
8	11	2.8e-06	0.00048	21.9	3.0	1	23	383	405	383	405	0.98
9	11	0.00017	0.028	16.3	1.3	1	23	411	433	411	433	0.99
10	11	1.6e-06	0.00027	22.7	2.9	1	23	439	461	439	461	0.99
11	11	3.3e-07	5.6e-05	24.8	0.7	1	23	467	489	467	489	0.98

Sequence Information

Coding Sequence: atggaagattGCGATCTGCGAAATATATGTAGAGCTTGTTTAACAGAAGAGGGTCAGTTCCAATCGATATTTGTCTCCGAAATTACTTCTGGAATATCACTTCATATCTCAGAAATGATGACTGCTTGTGCTTCAATTCAAatAACTTTAGGTGATGGTCTACCAGaacaaatttgtaaaacttgTGCTGCAGATAcagttaatttctttttatttaaattaaaatgtgagAAAAGTAATAGGATTTTAAGAGAAAAGTTACATTCTACTGATTTATACGAATCTGATTTTGCAAAAAGTGATGAAAATGTAGCagaacaggaaataaaatgcgaagaaatggaaaaaaacgatagtgaaaaaaaaactgataacttTGATGATATGTTCGATTCATATAGTAGTGACAGTGATCAATCTGACGAAGATAAGGAAGAATCTGAGACGATTCCAAAAGAGAAACCCAAAGAATTTTGGTGTGATATTTGTACCAAAAGATTTAGCAGAAATGATTTACTTCTGAGGCACAGGATAGCACATGCCATGAAAATGGAAGATcgaaaaattgaatttgataATGGATATGATAtcgatgatgatgatgatgataattATGTTGAAATTAAAGATTTGGTATATGCTTGTAACAAATGTGAATCAATTTACGTTCAAAAAGATGATTTAGATGCTCACATAAAATGTCATAGTAAAGAAGAGTACAATGTTAGTtgtgaaatttgtcataaaaaattctccaaattgGCTCATTTAAATAGGCATTTAAGAACAACACACTatattgaaaaacaatataaatgtgAAGTGTGTGACAAGGCATTCCATAGGCAAGAACAACTAAGAAATCATATGAATAGTCATACAGGTCTTAAGCCACATATCTGTGATATTTGTTGTAAAggcTTTAACCAAATCTCAAATTTGAAAGATCACATGCGAACTCATAATGGTGAAAAACCGTTTCTCTGTTCAACTTGTGGTAAAGGTTTTAATCAATTAGGAAATCTTAGACAACACACAGTTAGGCATAGTGGAATTAAAGCCCATCTTTGCAGTACTTGTGGCAGTGGTTTTGCTAGTAAAGGTGAACTATCAGCTCATTTACGTAAGCATACAGGAGCAAGACCTTTTGTGTGTACTGTATGCAACCATGGATTTACTACATCAAGCTCTCTTACCAAACATAAAAGAATTCATTCGGGGGAGAAGCCCTATGAATGTGATACttgtaaaatgaaattttctagaTCTGGAATTTTAGCAAGGCATAAAAGGACGCATACAGGAGAAAAGCCGTATAAGTGTAAGttttgcTTCAAAGCTTTTTCTCAATCGAACGATTTAACTTCACACCAAAGGATCCACACAGGAGAAAAACCGTTTATTTGCGACGAGTGCGGACAGGCATTTAGACAAAGTTCAGCTTTAAAAACGCACAAAAAGACTCacgttgaaaaaacaaaaaacgcgGGACTAGTTAAAATCGAGAAAGCTAATTGTGTGATAGAAGCAAAACCTATTTTTCTTACAGGAAATTTCAATACTGAATTTTTACCcggtttttga
Protein Sequence: MEDCDLRNICRACLTEEGQFQSIFVSEITSGISLHISEMMTACASIQITLGDGLPEQICKTCAADTVNFFLFKLKCEKSNRILREKLHSTDLYESDFAKSDENVAEQEIKCEEMEKNDSEKKTDNFDDMFDSYSSDSDQSDEDKEESETIPKEKPKEFWCDICTKRFSRNDLLLRHRIAHAMKMEDRKIEFDNGYDIDDDDDDNYVEIKDLVYACNKCESIYVQKDDLDAHIKCHSKEEYNVSCEICHKKFSKLAHLNRHLRTTHYIEKQYKCEVCDKAFHRQEQLRNHMNSHTGLKPHICDICCKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTVRHSGIKAHLCSTCGSGFASKGELSAHLRKHTGARPFVCTVCNHGFTTSSSLTKHKRIHSGEKPYECDTCKMKFSRSGILARHKRTHTGEKPYKCKFCFKAFSQSNDLTSHQRIHTGEKPFICDECGQAFRQSSALKTHKKTHVEKTKNAGLVKIEKANCVIEAKPIFLTGNFNTEFLPGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00387447;
90% Identity: -
80% Identity: -