Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: -
Assembly: GCA_963243735.1
Location: OY725348.1:9946779-9952005[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00078 0.13 14.2 1.2 1 23 114 136 114 136 0.99

2 16 0.00078 0.13 14.2 0.6 2 23 142 163 142 163 0.98

3 16 0.024 4.1 9.5 4.8 1 21 169 189 169 191 0.93

4 16 0.0025 0.42 12.6 2.2 1 23 197 219 197 219 0.95

5 16 0.0092 1.6 10.8 1.1 1 23 226 248 226 248 0.97

6 16 0.00031 0.053 15.5 0.3 2 23 255 276 254 276 0.97

7 16 3.2e-05 0.0054 18.6 1.4 1 23 281 304 281 304 0.97

8 16 8.8e-05 0.015 17.2 2.4 2 23 308 329 307 329 0.97

9 16 4.7e-05 0.008 18.0 1.2 1 23 335 358 335 358 0.96

10 16 1.7e-06 0.00029 22.6 0.5 2 23 366 387 365 387 0.98

11 16 6.5e-07 0.00011 23.9 2.5 1 23 391 413 391 413 0.97

12 16 0.00034 0.058 15.3 2.0 1 23 419 441 419 441 0.97

13 16 0.0092 1.6 10.8 3.7 1 20 447 466 447 469 0.93

14 16 0.0049 0.84 11.7 2.7 1 23 475 497 475 497 0.99

15 16 0.0012 0.21 13.6 3.8 1 23 503 527 503 527 0.91

16 16 0.0007 0.12 14.4 0.2 3 22 537 556 536 558 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00078	0.13	14.2	1.2	1	23	114	136	114	136	0.99
2	16	0.00078	0.13	14.2	0.6	2	23	142	163	142	163	0.98
3	16	0.024	4.1	9.5	4.8	1	21	169	189	169	191	0.93
4	16	0.0025	0.42	12.6	2.2	1	23	197	219	197	219	0.95
5	16	0.0092	1.6	10.8	1.1	1	23	226	248	226	248	0.97
6	16	0.00031	0.053	15.5	0.3	2	23	255	276	254	276	0.97
7	16	3.2e-05	0.0054	18.6	1.4	1	23	281	304	281	304	0.97
8	16	8.8e-05	0.015	17.2	2.4	2	23	308	329	307	329	0.97
9	16	4.7e-05	0.008	18.0	1.2	1	23	335	358	335	358	0.96
10	16	1.7e-06	0.00029	22.6	0.5	2	23	366	387	365	387	0.98
11	16	6.5e-07	0.00011	23.9	2.5	1	23	391	413	391	413	0.97
12	16	0.00034	0.058	15.3	2.0	1	23	419	441	419	441	0.97
13	16	0.0092	1.6	10.8	3.7	1	20	447	466	447	469	0.93
14	16	0.0049	0.84	11.7	2.7	1	23	475	497	475	497	0.99
15	16	0.0012	0.21	13.6	3.8	1	23	503	527	503	527	0.91
16	16	0.0007	0.12	14.4	0.2	3	22	537	556	536	558	0.88

Sequence Information

Coding Sequence: atgtttactaaAGTAGATATTTATTCGAATTTAATTCCTCAAAACTTGAGTCTGAAACAAGAATTGCCAGATCAAGAGATACAAAATTATGCTTTTAAAACCAAAACTTTATCAGAAGATGAAATGAAATCAAAAGAATCCAGTGATgatgaaattaaaacagaaatattatcgccaataaaacaagaaataccatttaatgaaaatttcattGAAGATGAGACAGAAGACGCAAATCTTTCGCCTGAAGAAAATTTGGAACTATCAATGGAAGAATTAgatgctgaaataaataaagatgTAGCTCAAGATGCTTTATATGAAAATGAAACTACAGTTTATAAATGCCCCATGTGTAAtggagtatttaaaaaattgccagAATATAAAGAGCATAAAAAGAAACATTACATTAATAAAAGAACctgtaatatttgtaaaaaggtACTACAAAGTCTTGGCAAACTTGAGGAACACATGAATAAACATTTAGGTATAAAACCGTTTAAATGTGATGAATGTGACAAAGCTTTTATCTCTGTACATTATATGAAATTACACAAGAAATGTCACAATACAGTGGCGCACTATAAATGTATGCTTTGTCCAAAATCGTTTCGAACTATGGGTTCTTTAAGGTGTCATCAGGTAGTTCATGcagaaaaaactgaagaattTAGATGTAAAgtGTGTAGTATTGATTGTGAAAATGCTACTGAATATAAATCACATATGGCAGAACAcggtaaaaaatcagaaattcaatgtggtttatgtaaaaaaactttcaatACAGATAGAGGATTAGAAGCACATTTAAGTAGTCATAAAGAATTAAACTTTCCTTGTGAATATTGTGGGAAAATATTTACATCGATGTATAGAATCAAAAGACATATTAAAAGAACTCATATGCCAAATAAATGTCAGGACTGTGGTgagGTTTTTTATGAGAGACATCTATTAACAAAACACAGAAAACTACATATAAGTAACCAACCGCATGAATGTCAGTattgtcaaaaagtttttgaaaaggCGAAAAATTTAGGTGAACATATTAGATTGCAACATAAACAAGACGGagagttaaaaaaatgtgatgttTGTGGTAAAGAGTTTATTAATAatgctttattaaaaaatcatgttaAAACTCATGACAAAACTTTCCAATGTACACATTGCGATAGGGTGTTTTCATCTAGATCGAACTTAGAAGTGCACTTTGTTACTCATTCTGGTGCCAGAAATCACAAATGTGATATTTGTAACAAGCTATTAAGATCCAGGactagtttaaaaaatcatatagcTTCTCATTCTGAAGAAAGACAATTCCAGTGCGAAATTTGTGCTAAAACGTTCAAAACAAACAGGAGGTTGTATGTTCATAAAATGTGTCATGCTACTGAAGAAAAGTACCAATGTGAGATTTGTCTTCAAAAATTTAGagtaAAACAATACCTCAAATTCCACATGAACAGACACTCGAAAGTGAAACCGTTCGAATGCGACATCTGCAAAAAACGTTTCAAGCATAAAAAATCCCGCGATAAACACGTGAGAATCGGCAAACATAAGCATGTCACTGACGATGAAAACGATTGCGATTTTTGCGATGAAACGTTTAGTACGCGGGATCAATTGCTCGACCATTTCGCAGAGGTTCATCATAAGGAAAATATTATCAACAGTTTGGATGAGGATggtgtagaaaaaaaagtagatgatgataatgatgatgatgatgatgaaaaaGTATAA
Protein Sequence: MFTKVDIYSNLIPQNLSLKQELPDQEIQNYAFKTKTLSEDEMKSKESSDDEIKTEILSPIKQEIPFNENFIEDETEDANLSPEENLELSMEELDAEINKDVAQDALYENETTVYKCPMCNGVFKKLPEYKEHKKKHYINKRTCNICKKVLQSLGKLEEHMNKHLGIKPFKCDECDKAFISVHYMKLHKKCHNTVAHYKCMLCPKSFRTMGSLRCHQVVHAEKTEEFRCKVCSIDCENATEYKSHMAEHGKKSEIQCGLCKKTFNTDRGLEAHLSSHKELNFPCEYCGKIFTSMYRIKRHIKRTHMPNKCQDCGEVFYERHLLTKHRKLHISNQPHECQYCQKVFEKAKNLGEHIRLQHKQDGELKKCDVCGKEFINNALLKNHVKTHDKTFQCTHCDRVFSSRSNLEVHFVTHSGARNHKCDICNKLLRSRTSLKNHIASHSEERQFQCEICAKTFKTNRRLYVHKMCHATEEKYQCEICLQKFRVKQYLKFHMNRHSKVKPFECDICKKRFKHKKSRDKHVRIGKHKHVTDDENDCDFCDETFSTRDQLLDHFAEVHHKENIINSLDEDGVEKKVDDDNDDDDDEKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -