Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: SNAI1
Assembly: GCA_963243735.1
Location: OY725354.1:12004093-12007174[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00041 0.069 15.1 0.7 1 23 314 336 314 336 0.95

2 12 7.6e-05 0.013 17.4 1.6 1 23 344 366 344 366 0.99

3 12 1.6e-05 0.0027 19.5 0.3 2 23 374 395 373 395 0.97

4 12 1.1e-05 0.0019 20.0 0.4 1 23 401 423 401 423 0.98

5 12 1.2e-05 0.0021 19.9 2.4 1 23 430 452 430 452 0.99

6 12 6.6e-05 0.011 17.6 0.4 1 23 458 480 458 480 0.96

7 12 1.4e-05 0.0024 19.7 0.1 1 23 486 508 486 508 0.98

8 12 8.5e-07 0.00014 23.5 1.2 1 23 514 537 514 537 0.96

9 12 6.1e-05 0.01 17.7 0.7 1 23 543 566 543 566 0.91

10 12 4.8e-05 0.0082 18.0 2.8 1 23 572 594 572 594 0.99

11 12 0.00013 0.022 16.7 0.4 1 23 600 622 600 622 0.94

12 12 0.0034 0.58 12.2 0.1 1 21 628 648 628 652 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00041	0.069	15.1	0.7	1	23	314	336	314	336	0.95
2	12	7.6e-05	0.013	17.4	1.6	1	23	344	366	344	366	0.99
3	12	1.6e-05	0.0027	19.5	0.3	2	23	374	395	373	395	0.97
4	12	1.1e-05	0.0019	20.0	0.4	1	23	401	423	401	423	0.98
5	12	1.2e-05	0.0021	19.9	2.4	1	23	430	452	430	452	0.99
6	12	6.6e-05	0.011	17.6	0.4	1	23	458	480	458	480	0.96
7	12	1.4e-05	0.0024	19.7	0.1	1	23	486	508	486	508	0.98
8	12	8.5e-07	0.00014	23.5	1.2	1	23	514	537	514	537	0.96
9	12	6.1e-05	0.01	17.7	0.7	1	23	543	566	543	566	0.91
10	12	4.8e-05	0.0082	18.0	2.8	1	23	572	594	572	594	0.99
11	12	0.00013	0.022	16.7	0.4	1	23	600	622	600	622	0.94
12	12	0.0034	0.58	12.2	0.1	1	21	628	648	628	652	0.92

Sequence Information

Coding Sequence: ATGCCTTCCAGTGGGATTTCTTGTATTGTTTGCAATGTTGGATGCGTTCCAAGCACGGACTACATTGAAATATTTAGCAAAGATCCTGCTACAGAAACCGATTTGCATATAGCTACACTAGTTGCTAAATTATTAGATAAAGATATTAAACCAGATCCAAATAATCATCAACTTATTTGCAAGAAatgttttactttaataacAGAACTTGAGGAATTGCAAACTAGGGTTGCTGaaataaaaagtgaaatattCGTACACCAAGACTCTgaaactactttaataaaggaaGAGAATGAAGAAAAGACTGAAGAGGGTAATAAGGAGAATGCAAACTCtaagaaaatgttatttattccATCTTCAGACGAGGATTCCACACAGGTTCCTACCGAAAAAACTAGTTTTGATGACATAAATCTCGAGCTAGCTAGAATGCATGGTGTTGATATTGGAGATATAGAACAGCAAGAAAAAGATAATGCTGAAATAGAGATGGAAACCAGCATTAATTATCAAAGTTTTTCaactgatgatggcgaaataATTGATTCTGGTGCAATTGAACATTCGTCAGATTCTGATTATGAACCACAAATTTCACCTTCACCCTTTATCAAACCTTCCTCATTTGTAGAAATTCCTCTTAATGATAAAGaaATGAATTTGAAACTTAATCTTGTTGGTAATGAAAACACTATAAAAAATCCATCTATAAACTTGGATAAAAAGCCTATTAtcctaagaaaaaaaattccaacacTTCCACTTGAAATATCTGGAGAAGATGATAGAAAATTAGATTCTACCATTGCAGTGCCTGTAGTATCGAAGGAAGGAAATTTATATACTTGTCTTCTTTGTGAAGGAGATGAAACCGTAGCTGGTGAATCAAAAGCAATTGTAGCCCATGTAAAGGATGCCCATGATGTGCGATTATACATCTGTGATGTTTGTGGACAAGATTTTTGCAAACGAAATCAACTTTCTGCTCATTTAGATGAACACGTAGCTGCTGAAGATGGAGATTTTCAGTGTGAAGTATGCAatagaattttcaataatctCAGATTATTTAGAATTCACAAACGTATGCATTATCCGCAGAGTAAGGCTTGGGTGTGTGATACTTGTGGGAAGAAATACAGCAGtaaaaatcttttagaagaGCATGTTAATACCCATTTAGgTGTTCGTCCGTATATATGTGGGGTATGTGGTAAAGATTTTGCAAGTAAATACACTTACAAAGCACATGAAAAGACCCACGAAGTGCGACCGAGACCATACAAGTGTAGCCAATGTGATAAGTCCTTTTTAAGTCAACAAAACCTTACACAACATGAACGTACCCACTTAGGAATGAAAGAGTATTCCTGTCAATTATGTGGAAAACAATTTGGTTCAGCTCACAACCTGGAAGTTCATTCAATAGTGCATACTGGATATAAACCATTTGTTTGTGGTTTATGTGGTAAAGCATTTGCTAGGAAAGCAGAAATTAGAGATCATGAAAGAACCCACACAGGTGAAAGGCCATACCAGTGCGAATTTTGTGGAGCAACTTTCAGTCAAAGATCAAACTTGCAATCTCATAAGAGAGCAACCCACTACGACGACAAACGGTACCAATGCACAATTTGTGGTAAAGGATTTAAGCGGAGGCGCCTCTTAGATTATCATAATAAAGCAGCTCATACAGGTGAAAGACCTTTCAAATGTGAAACTTGTGAAGCCACTTTTGTTTACCCTGAACATTTCAAAAAGCACCGTCgaattcatactggtgagaaaCCGTTCCTTTGTGAAGTATGTGGCAAGGCCTTCAACAGTAGAGATAATCGTAATGCTCATCGTTTTGTCCATTCTGATAAGAAACCCTACGAGTGTCTCGTATGTGGAGCCGGATTTATGAGAAAACCTTTGCTCtatcaacACATGCAAGCCCAGGGTCACCTGAACGACACAATAGTCGTCAATCAGCCTAGATTGACTACGGAAGATGATCAGTTGGTAACAGTTAATGCAGCTGGAGAAATGGAAATCGTCGATGCTTCCTCGACAGAAGGAAAATTGTATATACAAGACCAGGATGGTACTGAACATATAATTATCGATGGACAACAGATTAGTTTTGCTGAAGTTGGCAGTGACGATGATAATGACGAGATTATTGATGAAATTGAgcaggTAGTTACTGATCAAACAGATGAAGATTACGAGGAAATAATAACCAGCGATGCTCTAGCAAATGGAGAAACGCAAATAATTGAGACTCCTGATGGACCAGTACAGTTAGTGAAAGTTCGGATACCAAATGAAAATGGGGAAGAGGAAGAAGCATGGATAAAGATTGTTCCTGAATaa
Protein Sequence: MPSSGISCIVCNVGCVPSTDYIEIFSKDPATETDLHIATLVAKLLDKDIKPDPNNHQLICKKCFTLITELEELQTRVAEIKSEIFVHQDSETTLIKEENEEKTEEGNKENANSKKMLFIPSSDEDSTQVPTEKTSFDDINLELARMHGVDIGDIEQQEKDNAEIEMETSINYQSFSTDDGEIIDSGAIEHSSDSDYEPQISPSPFIKPSSFVEIPLNDKEMNLKLNLVGNENTIKNPSINLDKKPIILRKKIPTLPLEISGEDDRKLDSTIAVPVVSKEGNLYTCLLCEGDETVAGESKAIVAHVKDAHDVRLYICDVCGQDFCKRNQLSAHLDEHVAAEDGDFQCEVCNRIFNNLRLFRIHKRMHYPQSKAWVCDTCGKKYSSKNLLEEHVNTHLGVRPYICGVCGKDFASKYTYKAHEKTHEVRPRPYKCSQCDKSFLSQQNLTQHERTHLGMKEYSCQLCGKQFGSAHNLEVHSIVHTGYKPFVCGLCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYQCTICGKGFKRRRLLDYHNKAAHTGERPFKCETCEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQAQGHLNDTIVVNQPRLTTEDDQLVTVNAAGEMEIVDASSTEGKLYIQDQDGTEHIIIDGQQISFAEVGSDDDNDEIIDEIEQVVTDQTDEDYEEIITSDALANGETQIIETPDGPVQLVKVRIPNENGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00387446;
90% Identity: -
80% Identity: -