Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: zfh1_2
Assembly: GCA_963243735.1
Location: OY725337.1:20881090-20915574[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.0033 0.56 12.2 0.3 2 23 65 86 64 86 0.96

2 24 0.74 1.3e+02 4.8 2.4 1 23 92 114 92 114 0.94

3 24 0.57 96 5.2 0.4 2 16 177 191 176 198 0.80

4 24 0.78 1.3e+02 4.8 0.7 1 19 204 222 204 223 0.86

5 24 0.0074 1.3 11.1 1.0 1 23 302 324 302 324 0.97

6 24 0.0029 0.49 12.4 0.6 1 23 330 352 330 352 0.96

7 24 0.046 7.9 8.6 1.8 1 23 358 381 358 381 0.97

8 24 0.075 13 8.0 0.9 2 17 444 459 443 465 0.79

9 24 0.69 1.2e+02 4.9 0.9 1 23 471 493 471 493 0.92

10 24 0.00064 0.11 14.5 1.9 1 23 499 521 499 521 0.90

11 24 1.8e-05 0.003 19.4 1.7 1 23 527 550 527 550 0.97

12 24 0.0053 0.89 11.6 3.8 1 23 562 585 562 585 0.96

13 24 0.00011 0.018 16.9 0.2 2 23 595 616 594 616 0.97

14 24 4.8e-05 0.0081 18.0 3.5 1 23 622 644 622 644 0.97

15 24 0.0006 0.1 14.6 1.0 1 21 650 670 650 671 0.94

16 24 0.21 36 6.5 1.2 2 23 706 727 705 727 0.95

17 24 0.03 5.1 9.2 3.2 1 23 733 755 733 755 0.97

18 24 0.037 6.2 8.9 0.3 2 15 759 772 758 780 0.78

19 24 8.7e-05 0.015 17.2 1.3 1 23 786 809 786 810 0.97

20 24 0.0006 0.1 14.6 1.9 1 23 821 844 821 844 0.95

21 24 1.2e-05 0.002 19.9 0.7 3 23 855 875 853 875 0.97

22 24 3.9e-06 0.00067 21.4 2.3 1 23 881 903 881 903 0.98

23 24 0.00027 0.046 15.7 0.5 1 23 909 931 909 931 0.98

24 24 3.9e-06 0.00066 21.5 0.4 1 22 937 958 937 958 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.0033	0.56	12.2	0.3	2	23	65	86	64	86	0.96
2	24	0.74	1.3e+02	4.8	2.4	1	23	92	114	92	114	0.94
3	24	0.57	96	5.2	0.4	2	16	177	191	176	198	0.80
4	24	0.78	1.3e+02	4.8	0.7	1	19	204	222	204	223	0.86
5	24	0.0074	1.3	11.1	1.0	1	23	302	324	302	324	0.97
6	24	0.0029	0.49	12.4	0.6	1	23	330	352	330	352	0.96
7	24	0.046	7.9	8.6	1.8	1	23	358	381	358	381	0.97
8	24	0.075	13	8.0	0.9	2	17	444	459	443	465	0.79
9	24	0.69	1.2e+02	4.9	0.9	1	23	471	493	471	493	0.92
10	24	0.00064	0.11	14.5	1.9	1	23	499	521	499	521	0.90
11	24	1.8e-05	0.003	19.4	1.7	1	23	527	550	527	550	0.97
12	24	0.0053	0.89	11.6	3.8	1	23	562	585	562	585	0.96
13	24	0.00011	0.018	16.9	0.2	2	23	595	616	594	616	0.97
14	24	4.8e-05	0.0081	18.0	3.5	1	23	622	644	622	644	0.97
15	24	0.0006	0.1	14.6	1.0	1	21	650	670	650	671	0.94
16	24	0.21	36	6.5	1.2	2	23	706	727	705	727	0.95
17	24	0.03	5.1	9.2	3.2	1	23	733	755	733	755	0.97
18	24	0.037	6.2	8.9	0.3	2	15	759	772	758	780	0.78
19	24	8.7e-05	0.015	17.2	1.3	1	23	786	809	786	810	0.97
20	24	0.0006	0.1	14.6	1.9	1	23	821	844	821	844	0.95
21	24	1.2e-05	0.002	19.9	0.7	3	23	855	875	853	875	0.97
22	24	3.9e-06	0.00067	21.4	2.3	1	23	881	903	881	903	0.98
23	24	0.00027	0.046	15.7	0.5	1	23	909	931	909	931	0.98
24	24	3.9e-06	0.00066	21.5	0.4	1	22	937	958	937	958	0.93

Sequence Information

Coding Sequence: ATGGTGGTAAAGTTGGTTAAGACATCAGCCTTTATACTTGATCGATATCCGGGAGGAGGAAAAAGGCGGATAAGACTTTGGATAAGTGCAAAAAgtttccAAAAGAGGGTTGGATATACAAACCTGTCTAAATCTGATATAGTAGATTTGCCGTCATATTTGGTTAGTCCACTTGAGTTACCTCTACCTTTGAAATGCGATGTATGTACTGCCTCTTTTACGAATAACGTCAATTTTGGGGTGCATTCCAGGGAACACAGCGATGATAACTTATTTCGATGTCATTTATGCGATTATAGTGATAGGCAAAAAGCAAGATTTGAAACTCACATTTATGCTCACGAAGGttctaaaaaCATAGAGTATTGGGATCTTATGAGCATAATAAAACACAATTCGACGCATGTAGAAAAACCTATCAATTGTAAAAATTCGTTAAGTACACGAGAAATAAGATATCTCGCAAAACATAACATCCAAGATCCAGATTCATTTTATATTCAacctactgaattaaaaacGCCATTAAAATGTAACAATTGTGACGCCGTTTACACAAATAACGTTGATTTTGGTTTCCATTCAAGAGAACATAATTCACATGGATCGTTCGTATGTCATATTTGTGGTTACGAAGATTCTTCTAAAACTAGTTTCGAACTTCACTATTGGGATGGTATGAGCTTTATTAAACACAAATCAGTACATgcagaaaagtcaaaaagttCAATGACGACTCGCGAACTAAGATATCTCGCTAAATGTAAAATCGAAGATCCAGATGAATATTTCGTGAAACCTACTGAATTAGAAATACCATTACAATGTCAAAATTGTGGtggtttgtatacaaacaatgTTGATTTTGGTTTCCACTCACGTGAACATAATTCCCATGGATCATTCATATGTCATATTTGTGGCTACGAAGATTCTTCTAAAACTAATTTCGAGCTTCATATAAGGGATCATGAaggaattaaaaagtttaagtGTCCTTTATGTGATAAGCAATTTCCAAGACTGATAACCGCTTTTGAACATAAAAATTCACATAAAGGAGAAAAAGCATTCGAATGTGATATTTGTCATGATAAATATTCTCGCTTGATTACTCTAGTAACTCATAAGAGAAACATGCATGTTTGTAACACAGTAAATGATGCAAATGAATACACGGTCAGGCAAAAACGGAAATATacgagaagaaaaataaaaactgaaaatggcGAATCAGAAATAAAGGAGAAGAAGCGCAAAACTCTAAATAGAATCACACCTAGACACCCCCAACTTATAGCTGAACCCATAGAATTAGACGTTCCTCTAGAATGCAAAGAATGCAACAAAGAATTCaagaacaatttagaatttgCTTTCCATTCCAAAGAACACAATTCTGAAGGAAAGTACACTTGTCATATTTGCGAATACTCAAATATTTCCAAACCTCCTTTTGACCTTCATATGCGTGATCATGAAGgaattcataaatataaatgtcCTATGTGTCCGAAAACCTTTAAACAAAGCAAAGACGCCTCAGAACATAAGTACTTTCACACGGGAGAAAAACCCTTTCAATGCGAAATATGTGGAAAACATTTTCCTTATACTAAAAGTTTAGCAGCTCATCGACGTAATACTCACTACGAGATCATCACGGGTAAACCACTGCAAAAATATGATTGTAAAGTTTGTAATCGACACTACGAAAGCCACTCGGGTCTAGTGCGCCACTATTCTTCTAGCCACAAAGAACTTGGTTATGACTACTCAGTAGTATGTGATATATGTGGTAAAACAATAGCgacaagaaataaattaaagtatCATTTAAGAGTACACACCGGTTACAAACCACACGAGTGTAATGTTTGTCACAAAggtttttcgaaaaaacaagAACTTAAAATCCACGAGAGAGTACATACTGGCGAAAAACCATTCACTTGCTCTTATTGTGGAAAGAAGTTTGCCCAATTAGCTCCTTACAGGAATCACAAGAAACGAAAGAATTCCAAGAAAAAGAATCCCTTACTTGTAATCTTCGAGCCAGAAATTGACGAAACAACGACAAAGTTGAGCGCTATTCTCAAAATCGACAAACCTCTAATATGCTCATCTTGCGAAACGGCATTTACCTCTCACTTAGAATTAGCTTACCACTCAAAGAAACACAGTGAGTCAAAACTTCACACTTGTCATATATGTGATTTCAGCGTAGCTACGAAGTTTCGGATACGAAGACACATCAACGGTCACGCAGGATGGAAATGCGATATTTGTAATAAGGTATTTAGAAAAGCTAGAGCAGGATTAAAACACTCATacattcatactggtgaaaagaTGTACCAGTGTGAAATTTGCGGCAAACACTTAGCAAACGCAAAGAGCTTAGATACACACCTTAATACTATCCATCACGAAATAATAACCGGTAAACCTTTAGTCAAATTCGATTGTCCTATATGTAAAAAACACTACGAATCCGAAACAGGCCTAAGAAGACACTACTCCAGTTCTCACCGAGAAATGGGAGTAGATCTTACTGTAATCTGTGAAGTTTGTGGAAAGAGAATATCAAATAGAACTCGATTAACGCGACACATGAGAACTCATAATGGAGAAAAGCCTTTTCCATGCACAATCTGTAACAGAAATTTTGCGACAAAATGTTTATTGACGTCACATATGAGGGTTCATACTGGAGAAAAACCATATATTTGTTCGTTTTGTGGTAAACGTTTCGGGCAATCTGCCCCGTATAGGTATCATATTAAAATACATACTGGGGATAGAAGGTATAACTGTAAAATGTGTGGAAAAGCATTTATTTcaaacagtaatttaaaaattcattcaaaaacTTGCTGTACACCTATTAGGGATTAG
Protein Sequence: MVVKLVKTSAFILDRYPGGGKRRIRLWISAKSFQKRVGYTNLSKSDIVDLPSYLVSPLELPLPLKCDVCTASFTNNVNFGVHSREHSDDNLFRCHLCDYSDRQKARFETHIYAHEGSKNIEYWDLMSIIKHNSTHVEKPINCKNSLSTREIRYLAKHNIQDPDSFYIQPTELKTPLKCNNCDAVYTNNVDFGFHSREHNSHGSFVCHICGYEDSSKTSFELHYWDGMSFIKHKSVHAEKSKSSMTTRELRYLAKCKIEDPDEYFVKPTELEIPLQCQNCGGLYTNNVDFGFHSREHNSHGSFICHICGYEDSSKTNFELHIRDHEGIKKFKCPLCDKQFPRLITAFEHKNSHKGEKAFECDICHDKYSRLITLVTHKRNMHVCNTVNDANEYTVRQKRKYTRRKIKTENGESEIKEKKRKTLNRITPRHPQLIAEPIELDVPLECKECNKEFKNNLEFAFHSKEHNSEGKYTCHICEYSNISKPPFDLHMRDHEGIHKYKCPMCPKTFKQSKDASEHKYFHTGEKPFQCEICGKHFPYTKSLAAHRRNTHYEIITGKPLQKYDCKVCNRHYESHSGLVRHYSSSHKELGYDYSVVCDICGKTIATRNKLKYHLRVHTGYKPHECNVCHKGFSKKQELKIHERVHTGEKPFTCSYCGKKFAQLAPYRNHKKRKNSKKKNPLLVIFEPEIDETTTKLSAILKIDKPLICSSCETAFTSHLELAYHSKKHSESKLHTCHICDFSVATKFRIRRHINGHAGWKCDICNKVFRKARAGLKHSYIHTGEKMYQCEICGKHLANAKSLDTHLNTIHHEIITGKPLVKFDCPICKKHYESETGLRRHYSSSHREMGVDLTVICEVCGKRISNRTRLTRHMRTHNGEKPFPCTICNRNFATKCLLTSHMRVHTGEKPYICSFCGKRFGQSAPYRYHIKIHTGDRRYNCKMCGKAFISNSNLKIHSKTCCTPIRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -