Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: -
Assembly: GCA_963243735.1
Location: OY725336.1:38553054-38556786[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.1e-06 0.00087 21.1 0.4 1 23 185 207 185 207 0.98

2 12 6.8e-05 0.012 17.5 0.9 1 23 213 235 213 235 0.98

3 12 2.6e-05 0.0044 18.9 2.2 1 23 241 263 241 263 0.98

4 12 9.7e-05 0.016 17.1 2.0 3 23 277 297 275 297 0.95

5 12 0.0001 0.017 17.0 0.2 2 23 304 325 303 325 0.96

6 12 4.2e-07 7.1e-05 24.5 1.2 1 23 331 353 331 353 0.99

7 12 3e-07 5.1e-05 24.9 0.5 1 23 359 381 359 381 0.99

8 12 6.1e-06 0.001 20.8 0.4 1 23 387 409 387 409 0.98

9 12 4.8e-07 8.1e-05 24.3 1.3 1 23 415 437 415 437 0.99

10 12 3.8e-06 0.00064 21.5 0.9 1 23 443 465 443 465 0.97

11 12 4.2e-07 7.1e-05 24.5 2.2 1 23 471 493 471 493 0.96

12 12 8.5e-06 0.0014 20.4 4.8 1 23 499 521 499 521 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.1e-06	0.00087	21.1	0.4	1	23	185	207	185	207	0.98
2	12	6.8e-05	0.012	17.5	0.9	1	23	213	235	213	235	0.98
3	12	2.6e-05	0.0044	18.9	2.2	1	23	241	263	241	263	0.98
4	12	9.7e-05	0.016	17.1	2.0	3	23	277	297	275	297	0.95
5	12	0.0001	0.017	17.0	0.2	2	23	304	325	303	325	0.96
6	12	4.2e-07	7.1e-05	24.5	1.2	1	23	331	353	331	353	0.99
7	12	3e-07	5.1e-05	24.9	0.5	1	23	359	381	359	381	0.99
8	12	6.1e-06	0.001	20.8	0.4	1	23	387	409	387	409	0.98
9	12	4.8e-07	8.1e-05	24.3	1.3	1	23	415	437	415	437	0.99
10	12	3.8e-06	0.00064	21.5	0.9	1	23	443	465	443	465	0.97
11	12	4.2e-07	7.1e-05	24.5	2.2	1	23	471	493	471	493	0.96
12	12	8.5e-06	0.0014	20.4	4.8	1	23	499	521	499	521	0.98

Sequence Information

Coding Sequence: atggatATGAGCATGTATTTAACAGCGCCTCTGCAGATTGCCAAAATTTGCAGGGCTTGTTTAACTGAAAAAGGAGATATGAGGCCCTTATTCGGAGCTTGTTTGGACGAAATGCTCAATTCATTTGCCTCCATTCAGatttctGAAAATGATGGTTACCCACATCTTATGTGCGTACAATGCGTTCTTCAGTGCAGCAGGGCATATACTTTTAAACAACAATGTGAAAAATCTGATAATATTTTACGCCAATATCTTTCTCCACAATttcagcaaCAATTAGCAGAGTCAATTGCAGAAAAACAAAGGGAACAAGCCAAACATGAACTACAAGAACAGTTGCAATTTTCTGAACACATAGAAACTGTTATTACCATTGAACATGATATTCCAGAATTTGTAACCTACGCTGAAGAAGATCAACTAGACGTAAAAGAAGGTTTATACACTATAGAAGCAGCTACAGTAGAAACAGATCATCCTTTGAACGATGAACTCGGCGATAGAATAGTCCTTCAACTAGAAAAACCTGATTctaacaacaaattaaaatattcctgTACTAAATGCGACATGTCTTTTGCTTTAAAAGTGGACCTCAAAGTTCATATGATGTCTCATCCGAAAGATCTAGAATACGCATGCCACATATGCAACAAGGCGTTCAGCGAAGCGCGTATTTTGAAACGCCATCTCAAAATTCACTTGGAGCAAAAGCCTCATCAGTGCGACCAATGTGATATGGCGTTCGCGGAGAGTTCTAATTTGAGCaaacataagaaaaaacatacagGGGAGTTGAGGAATATCAAGGGAAAGCCTCATTTATGTTCTGTATGTGGAAGATCCTTTAAATGGGCTTCAAGTTTGTCTAAACATATGAAGTACCATACTGGACATAAGTTATTGTCTTGTGAATATTGTGGGAAGCAGTATGTAGAGgcgAGAAGTCTGAAGATTCATATTAGTTCGCATACTGGAGAACGACCTTACACATGTGAAGTTTGTGATAAAGGTTTTACTCAGATTTGTAATTTAGAAAAGCATATTCGTGTTCATACTGGCGAAAAACCATATCAGTGCCCAATTTGCAACAAAAGgtttactCAATCAGGATATGTAGGAATTCATATGCGTACTCACACAGGAGTTCGGCCTTACGTTTGTGGTACATGTGGCAAAGCATTTGCGGCTTCTAGTACTCTAAATATTCACCAACATACTCATACTGGGGAAAAACCCTATACCTGTCAAGTTTGTAGTAAATCTTTTAGCCGCCAGGAAACTCTGATTATACACACCAGATCGCATACTGGAGAAAAACCGCACATTTGTAGTGTGTGTAATAAAGGCTTTACAAGTTCTGGATTGTTATCCGGACATATGAGGACTCATACCGGGGAAAAACCGCACGCTTGCGAATTTTGTGATAAAAAATTTGCTAGTTCTAGCAGTTTAAAGGTGCATATGAGATCACATACGGGCGACAAGCCATTtagttgtaaaatttgtaataaaaacttttctCAGTCTTGTTCGCTCCAACAGCATTTATCCACTCACGTTTCCAAGACGGAGGAACTTAAAGTAACTTTACCGGAACTCATgaccGTCGATAATCAGACTATTCAAGTGCAAActatttcaacaatttaa
Protein Sequence: MDMSMYLTAPLQIAKICRACLTEKGDMRPLFGACLDEMLNSFASIQISENDGYPHLMCVQCVLQCSRAYTFKQQCEKSDNILRQYLSPQFQQQLAESIAEKQREQAKHELQEQLQFSEHIETVITIEHDIPEFVTYAEEDQLDVKEGLYTIEAATVETDHPLNDELGDRIVLQLEKPDSNNKLKYSCTKCDMSFALKVDLKVHMMSHPKDLEYACHICNKAFSEARILKRHLKIHLEQKPHQCDQCDMAFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRSFKWASSLSKHMKYHTGHKLLSCEYCGKQYVEARSLKIHISSHTGERPYTCEVCDKGFTQICNLEKHIRVHTGEKPYQCPICNKRFTQSGYVGIHMRTHTGVRPYVCGTCGKAFAASSTLNIHQHTHTGEKPYTCQVCSKSFSRQETLIIHTRSHTGEKPHICSVCNKGFTSSGLLSGHMRTHTGEKPHACEFCDKKFASSSSLKVHMRSHTGDKPFSCKICNKNFSQSCSLQQHLSTHVSKTEELKVTLPELMTVDNQTIQVQTISTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912434;
90% Identity: iTF_00387438;
80% Identity: -