Ntra028544.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- -
- Assembly
- GCA_963243735.1
- Location
- OY725346.1:4135135-4155084[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.6e-05 0.0027 19.5 0.7 2 23 216 238 216 238 0.97 2 21 0.0082 1.4 11.0 1.3 1 21 343 363 343 364 0.95 3 21 0.37 63 5.8 5.0 1 23 393 416 393 416 0.91 4 21 2.8 4.8e+02 3.0 0.0 6 20 427 441 427 443 0.93 5 21 0.0018 0.3 13.1 0.6 1 23 449 472 449 472 0.98 6 21 9.8e-05 0.017 17.0 2.4 2 23 549 570 549 570 0.97 7 21 0.23 39 6.4 0.1 1 14 589 601 589 611 0.75 8 21 0.0029 0.49 12.4 0.4 2 23 615 636 614 636 0.96 9 21 0.00012 0.02 16.8 0.0 2 23 666 687 665 687 0.96 10 21 0.0008 0.14 14.2 0.5 1 23 704 727 704 727 0.96 11 21 0.0012 0.2 13.6 2.5 2 23 741 762 740 762 0.97 12 21 0.0025 0.43 12.6 8.3 1 21 789 809 789 811 0.94 13 21 0.00015 0.026 16.4 0.2 2 23 827 848 827 848 0.96 14 21 0.00027 0.046 15.6 1.0 1 23 862 884 862 884 0.98 15 21 2.6e-05 0.0044 18.8 0.7 2 23 895 917 894 917 0.96 16 21 0.00019 0.032 16.2 0.5 1 23 930 952 930 952 0.93 17 21 1.9 3.2e+02 3.6 0.0 1 23 986 1009 986 1009 0.93 18 21 0.00025 0.042 15.8 1.4 2 23 1020 1041 1020 1041 0.97 19 21 1.4e-05 0.0024 19.7 0.4 1 23 1070 1093 1070 1093 0.97 20 21 1.5e-05 0.0025 19.6 4.8 1 23 1101 1123 1101 1123 0.99 21 21 0.0016 0.28 13.2 0.1 1 23 1138 1161 1138 1161 0.96
Sequence Information
- Coding Sequence
- ATGGCAGAAACAATTAATTGCCAATCTTGTTGCAGGCTTTGCCTGTCCGAGAAGATGGATAGTTTACAACCCATTTTCGGTAAAACGGCAAACGATACAGAGTTAGCAAAGAAAATATTCCATTACCTAAGCATAGAAatcACATTATCCGAAACAGTATCAACCATGGTCTGTGAGGAATGTacggaaaaaatatcaaattggaATTCATACAGGGAAAAATGCGttcaaaaccagaaaaaattctCAGATATCACTATTCCTGTACCATTACCTGTTTCAGAACCGATCAATTCAACCACTGATGTTCcaacatttgaaaatattAATATCCAAATTAAAGAAGAGCCAATGACTGAACCCGATCCTGCTAATGAAACTCCTCCGGAATTTATAGATGAGCAACAATCCGAGATAATAAATCCAGTTTCTTCAGCTCCTGTTGATCCAATTCATCATTTAGATCAGACACAAATTGTAGATCAGactcaaatttttgttaaaagcgAACCACTAGATATTGACCATAGCGAGGAACCAATGGATCAAGAATATCATGAATTTCCACCTACTTTATCTCCACATCCGTTAAATAATGGTGATGGACCAGATGAGGCTTTCGTGGGTGATCctgattttaatagaaaatgtagTGTTTGTGGCAAAGTTTTTAGCAATGCAGGCAACAAGAAAAAGCATGAAAGAGTTCAGCATGGACTCCATCCTGTCCTTTCAGTTGTTCCTCCACCAGCTAATGGTCTTACTAATGGTGTTGCTGACGAATTAGACGCTACAAAATCCGAACAACAAAAAATCCTATTCGCAATGGGATTAAAACTGCTCAAAACCAACGCAACTCCAATTTCCTCCGAATCTCTATCAAAAATCGAACTCAGCTACATCGCAAAATGTAAAGCAATGGTCAATATGCATAAATCTTTAACATGCGCCTGTCATAATGTACCTCATCAGAACTTGAAAGGTTTATTATCTCATTTAAGAGCTCTAAGAATATGGTTTCCGGTTTTTACATGCTACAATTGTATGATAACGTTCACTGACAGATCTACTTTTACTAGACATATATCTAGATGTTCCAGTCAAGCTTTAAACTCGATTACGAAGCTCAGTACTCTTACTCAACGCACTGAAGTAAAAACAAGATTATATCAGAACTTTAAATGCACCATATGTAAATTTATGTATAGTTTCCATGAGGATTTTTGTTCCCACGTCGACGAAGATCACTCCATGTTGCAATTTCCGGTTCATTGCCCTTGCGGAAGAGTTTTTGAAGATATTGATGATTATAAAGACCATGTATACGTTAGCTGTTTAGTTGAATATTACTGCGATATTTGCTTCATTACAACAAAAACTTTAGATGAATTCGAAAAACATGCTAAAACCGTTCACGATGACTCTGAAGGATTTATTCTTCTTCAAGATGATAATTATAAAGTTAGAAAACCTGCAATGCATCCTACTCCATCTTCAACAGGCGTTGATGAATCTGCTATATTAACCGGTAAGCGAGAAAGAAAAGCTTCAGTTAAAACACCATTAGTGGAAGAAGATTCATTAGATGAAGAACCATCTTCATTGATTTCACCGAATTTCTATACCCCAAAAACTGATAATCGAGTATGTCCTGTATGTCATAAAGAATACTCTTCTTATAAAAACATGATGCGACATTATAAAACCCATAGAGCAGAAGATCAATCTAAATTTGATATGGAATTAGATGATGAGGAATCTTTCTATTCATGTCCGGATTGTGGAGGAATGTTTAACACGTTAGAATGGAAAATTCATTTAACCGAACAGCACCAAAATAAACCTTGTGGAGAATGcggaaaattctttcaattCCAAACCGAATTGGACCAACACAGAAGCGTCCATCTCAATCTTAAAGTTTATAGAGATTCTAAAACTAAATCTTATAAAAGCACTATGGTTAGTCCAGGTTCAGAGGAAGATGAAATGTTAGTATGCGAAATATGCGATGTAATGTTTACTAATAAAGAAGATTTAGATAGTCATATAGTCACGCATAAATCTGAAGGAATGGATACTGATTTAGTCGTTCCAGaagtaaagaaatttaaatgtgAAGTTTGCAGTGAGGAATTTAATAGTTATTCCAGTTTATGGGAACATAATAAAGTGCGACATCCAGAAAGAAAAACACCAAATGAGAATACTTATCCTAAACAATGTCCAGATTGTGATAAAGTATGTACTACAGGAGCAGCGTATCACAGACATAGACAAATCCACTTACCTGCTGATGCAAGTTCTAGTAGATCGCATTTGCTTAgagtaaaaaaaaccgaaaccaCAGATGATGAATCTTATCATACTTGTAAACGctgttttaaagtattttctagcaaatataatctaaaaaatcacttaaaatgtCACGGTATTAACATAAATCCAGCTAGTAAGAAACCCGTAAGAAAAGCTGTATGTAAGATATGCCAGCAAGTTTTCGAAAGCAATGAAGATTTAATCAAACATAAACTCATTCATTCTGAAGAAATGGAATTAGATAATAACGCGCCGCTATTATTTACTTGCGATGTTTGCGTAATGACTTTCAGTAGTAAAATCGCtttgaaaaaacataaagaaaaacaCAATCAAGAGTTAAAGACGGTTAAAGGTTTACAATGTAAATATTGCAAGATTACATTTGAAACATCCACGCAATTATCCCAACATATGTTAGTAGAGCAtgatgaaagaaataaaaagaaagtttATCCTGAGGAGCATACTTGTACTATCTGTCAAAAATCATTCCAAACCGCAGGAGCTTTAACAACTCACGTTGGTTGGCATAAACGTGCACAAAACGAAGGTAATAccaagataatgaaaaataatgtcGTTCCAATACCTgctaaagttaaaattaaagaagaacCAACTGAACCAAAATTCCAATGTACTACTTGTTTGGCTGAGTTACCAAACGATACGGCCCTTCAAGTGCATATACTCGAAAAGCATAGAAGCGTAAGCGCTATTATGTTGATTCCTCGTTGTAATACTTGTAATAAAGATTTCGCTACTCAAGATGAGTATGAGACTCATAAACGCCTTCACGATTTCTTGGAGCGCCAGAAACAACACGAACAAAAAATGCTTCTACAACAACAAGAACAACCTCTCGGACAGAAACAGAAGAATTTCCcttgtaaatattgtaatgcCGCTTTTAGTAGATCTGATACATTGGCAGGCCATATGAGACAGTTCCATAAGGAACATATTGTGACTGAATTTAAGTGTCATCATTGCGATAGAGTTTTCGAAAAGCAGAATTCGTTGACGATTCATTTGAAAGTACACGAGAAACAGAGAACCCTTCAAGCGCCTTCTAGTAAGCCTCTTTTTTCGTGTTCTATTTGTAATATGGGATTCGATTTACCGAAAGATTTAAGGGCTCATACTATTAGCGCTCATCCGTTTTGA
- Protein Sequence
- MAETINCQSCCRLCLSEKMDSLQPIFGKTANDTELAKKIFHYLSIEITLSETVSTMVCEECTEKISNWNSYREKCVQNQKKFSDITIPVPLPVSEPINSTTDVPTFENINIQIKEEPMTEPDPANETPPEFIDEQQSEIINPVSSAPVDPIHHLDQTQIVDQTQIFVKSEPLDIDHSEEPMDQEYHEFPPTLSPHPLNNGDGPDEAFVGDPDFNRKCSVCGKVFSNAGNKKKHERVQHGLHPVLSVVPPPANGLTNGVADELDATKSEQQKILFAMGLKLLKTNATPISSESLSKIELSYIAKCKAMVNMHKSLTCACHNVPHQNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHISRCSSQALNSITKLSTLTQRTEVKTRLYQNFKCTICKFMYSFHEDFCSHVDEDHSMLQFPVHCPCGRVFEDIDDYKDHVYVSCLVEYYCDICFITTKTLDEFEKHAKTVHDDSEGFILLQDDNYKVRKPAMHPTPSSTGVDESAILTGKRERKASVKTPLVEEDSLDEEPSSLISPNFYTPKTDNRVCPVCHKEYSSYKNMMRHYKTHRAEDQSKFDMELDDEESFYSCPDCGGMFNTLEWKIHLTEQHQNKPCGECGKFFQFQTELDQHRSVHLNLKVYRDSKTKSYKSTMVSPGSEEDEMLVCEICDVMFTNKEDLDSHIVTHKSEGMDTDLVVPEVKKFKCEVCSEEFNSYSSLWEHNKVRHPERKTPNENTYPKQCPDCDKVCTTGAAYHRHRQIHLPADASSSRSHLLRVKKTETTDDESYHTCKRCFKVFSSKYNLKNHLKCHGININPASKKPVRKAVCKICQQVFESNEDLIKHKLIHSEEMELDNNAPLLFTCDVCVMTFSSKIALKKHKEKHNQELKTVKGLQCKYCKITFETSTQLSQHMLVEHDERNKKKVYPEEHTCTICQKSFQTAGALTTHVGWHKRAQNEGNTKIMKNNVVPIPAKVKIKEEPTEPKFQCTTCLAELPNDTALQVHILEKHRSVSAIMLIPRCNTCNKDFATQDEYETHKRLHDFLERQKQHEQKMLLQQQEQPLGQKQKNFPCKYCNAAFSRSDTLAGHMRQFHKEHIVTEFKCHHCDRVFEKQNSLTIHLKVHEKQRTLQAPSSKPLFSCSICNMGFDLPKDLRAHTISAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -