Ntra007331.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- -
- Assembly
- GCA_963243735.1
- Location
- OY725337.1:20826086-20851481[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0028 0.47 12.5 2.1 1 23 12 34 12 34 0.96 2 30 0.0019 0.33 13.0 1.6 1 23 40 63 40 63 0.97 3 30 0.00056 0.095 14.7 2.8 1 20 75 94 75 98 0.89 4 30 1.4e-05 0.0024 19.7 0.5 2 23 108 129 107 129 0.97 5 30 9e-05 0.015 17.2 5.5 1 23 135 157 135 157 0.97 6 30 0.00013 0.022 16.7 1.5 1 23 163 185 163 185 0.97 7 30 0.11 19 7.5 0.3 2 23 251 272 250 272 0.91 8 30 0.21 36 6.6 2.3 1 23 278 300 278 300 0.97 9 30 0.14 23 7.1 4.2 1 23 306 328 306 328 0.94 10 30 0.11 18 7.5 1.4 1 23 334 357 334 357 0.92 11 30 0.007 1.2 11.2 5.3 1 23 369 392 369 392 0.94 12 30 3.2e-05 0.0055 18.6 0.3 2 23 402 423 401 423 0.96 13 30 5.8e-07 9.8e-05 24.1 5.7 1 23 429 451 429 451 0.99 14 30 0.00013 0.022 16.6 1.7 1 23 457 479 457 479 0.96 15 30 0.26 44 6.3 0.4 2 23 541 562 540 562 0.89 16 30 0.96 1.6e+02 4.5 6.6 1 20 596 615 596 618 0.80 17 30 0.00023 0.04 15.9 2.5 1 23 624 647 624 647 0.97 18 30 0.00097 0.16 13.9 0.7 1 23 659 682 659 682 0.95 19 30 0.063 11 8.2 1.0 3 23 693 713 691 713 0.96 20 30 0.00012 0.02 16.8 0.2 1 23 719 741 719 741 0.98 21 30 0.031 5.3 9.2 1.6 1 16 747 762 747 764 0.86 22 30 0.063 11 8.2 0.1 2 23 840 861 839 861 0.89 23 30 0.015 2.6 10.2 5.2 1 23 867 889 867 889 0.98 24 30 0.0006 0.1 14.6 0.3 1 23 895 917 895 917 0.98 25 30 5.6e-05 0.0095 17.8 5.3 1 23 923 946 923 946 0.98 26 30 0.0075 1.3 11.1 2.1 1 23 952 975 952 975 0.89 27 30 0.013 2.1 10.4 1.7 3 23 984 1004 982 1004 0.97 28 30 8.6e-07 0.00015 23.5 0.3 1 23 1009 1031 1009 1031 0.98 29 30 0.00014 0.023 16.6 3.7 1 23 1037 1059 1037 1059 0.98 30 30 0.0027 0.45 12.5 1.1 1 20 1065 1084 1065 1089 0.91
Sequence Information
- Coding Sequence
- ATGCACGTTAGAAATCACGAAGGGACTACCAACTACAAGTGCGAAATTTGTCAGAAAGCATTTACAGTTAGTACTCATGCTATGGagcacaaaaattttcatactgGAGAAACACCATTTGTCTGTGAGATttgtgggaaaaaatttatgttttcaaAGAGATTGGACGAGCACAGAAAACGTAGCCATTATGAAGTTCTAACaggCCAACCTCTTGTAAAATTCGATTGTCAGATTTGTAACAAGCACTACTCATCCTCAAGTGGTCTTCGTAGACACAATATATTTAAACACAAAGCTACAGGAATCGACTTTTCAGTAGTTTGCGATATTTGCGGTAAAAGAATTTCCAGCAAAGATAAACTCAAATATCATCTCCGTACTCACACCGGTTATAAGCCGCACTCTTGTTACGTGTGTACGAAGAGTTTTTGTAAAAAGGACCAATTGGTTGACCATATTCGTACGCATACGGGGGAGAAACCACACATCTGTAAGTTGTGTGGCAAAGGATTTGCCCAGAGAACACCACTGAAAACTCACGAAAAAACCCATTATATAGATAGATCTGGGTGTTTTTGTAAGGTTTGTGGaaatataaaactTGAAATCGATATAGAAGAAGCTACGTTAAGGGCCGAAACGTACAATTCACCAAAATCCAAAAAGAGACGAAGATCCCGACGTAAAAATCAAAACCCTAAGGAAGTAATGAATCATCCTCCACCTTTAAAACTAGAAGAACCAATAAAATGCAACAGTTGCAACGAAACATTCAATAACAATGTCGTATTCGCTATTCATTCCTTAAATCACAGCAAAGACAAGAAATACACTTGTCACATGTGTAAATATCGTACGAATGCGCGGTACCAGATAGAGATGCATGTCAGAGCGCACGAAGGAACCACTAAGTATAAGTGCGAGATTTGCTATAAGGCTTTTACAGTTAGTTGTCATGCTGTGGAGCACAAGAATTTTCATACTGGCGAAAAACCTTTCCTATGTGAAGTTTGTGGGaaagattttatgttttcctggAGATTGGATGCTCATAGAAAGCTTTGCCATTATCAAGTCTTAAcagGAAAACCTTTGAAAAGCTTTGACTGCACCAAATGTAACAAACATTACAAATCTTCGAGTGGTCTACACTGGCATAATATTACAAAACACAAAACCACCAAAATCGATTTGTCTCTGATATGTGAAATTTGTGGTAAAAAATTTGCTAGTCGAACTGTTCTCAAATATCATCTTCGCATTCATACAGACTACAAACCGTACTCTTGTCACGTTTGtacaaaaactttttccaggaAGGAACATTTGGTTCAGCATATTCGAACGCATACGGGGgaaaaaccgcatatttgtAAATTGTGTGGAAAAGGATTTACCCAAAGGACGCCGTTAAAAACtcatgaaaaaatacataatcaAGAGAGAATTAAATTGAAacAACCAAAATCAAGACTAAAAAGAGAACccaaggaaaaaaaagaaaaaccaattAAAGATGACTTAGAAGAGAAAAGACCAAAACGAGAAGGAAAAAAGAGGGGACGGTATCGACAAACTTCGCCACTTCCTGAACCTACTAAACTAGAAGAACCTCTACAATGCACCCAGTGCAAAGAAGAATTTTATACGAATCTAGATTTCGCCATGCATTCGATAGATCACAGTACCGAATCTAAATACTCTTGTCATTTATGCAACTTTCATAACCTCTGTAAGTATCGGTTTGAAACTCACGTTAGACTACACGACGGCAGTACCAAAcacaaatgtaaaatttgtggTAAAGCCTTTAGATGTAACACACACGCCGAAGAACATAAGTACTTTCATACCGGAGAACGTCCGTTTCAGTGTGAAATTTGCGGAAAACATTTTATGTATTCTAGAAGATTAGCCAACCATCGCAGAAACATTCACTATCAAACTATCACCGGAAAACCCAGAGTCAAATTCGACTGCGAGTACTGCGATAAAAAATTCGATTCTATAGCTGGTTTAACTAGTCATAGTAACAAAAAACATCTCAACATTGTTAATGATATATCGGtaatttgtgaaatttgtgGTAAAAGAATTTCTTGTAAAGGTAGATTAAAGTACCATCTTAGGGTACATAGCGGGGACAAACCATTTTCTTGTATGGTGTGTCCTAAAAAGTTTGCTATGAAAGATTTGCTTATCGAACACACTAGGGTTCATACAGGGGAAAAACCGTACGTTTGTAAATTTTGCGGTAAAACTTTTGGCCACAGGTCACCGTACAGgaaaaaatctaaaaaaaaatacaaaccaaGAGCACGTAAACccaaaaacaaggaaaataaatCTTCCAAAGACATAAAAGATGAAATCTCTACTgacgaagaagaagaagaaaaaaaaccaaaactaaaaaaagaaagaataccaaaagaacgaaaacgaaaaaaagaaaaagaagagaaagtGCGTAAAAGGAAAATAAACGAACCTCCAGTTTTAGATGAAGAAATTCAATGTACCAAATGCGAAGAGTCTTTCAACACAAATTTAGGATTCGCCATACATTCCATTGCGCATCGCGATGACTGCTTGTATCACTGCCATCTTTGTGACACCACGCTCAAAACGAAGTATACCATAGAAACTCACGTTAGAAGCCACGATGGTTGCTTGCGGTACAAATGCGATATATGTGGAGACTATTTTAACGTTAAAAGTGAGTTACGTGACCATGAAAATTCCCACACCGGTTCCAGTCCTTACCAATGCGAAGTATGCGGTAAACATTTCGACTTCCAAAAACATCTATCTTCCCATAGAAGAAGTCTTCACGCTAAATCTAAATCTTAcgattgtaaaatatgtaatattaCTTATAGATTTCCATCAGGTCTATATCGCCACAATCATTTAAAGCACAAAAATATTGATGCTTCTGTCATATGCGATATTTGTGGAAAACGACTTTCTTGTAGAGAAAAACTAAAGTCCCATCAGAAAATCCACTTGGGTTACGTTTTTCCCTGTCTTGTTTGCAATAAACCGTTTACTAGAGAGATTCAATTAAGAGTGCACATGAGGACGCATACTGGAGAGAAACCATATGTTTGTAAATTCTGTGGTAAGGCATTTAAACAACACTCTCCCTATCGGTATCACATTAAGAATCACATTGGGTTAAGACCCCATGTTTGCGGATATTGCGGGAAATCGTTTATTGCAAAAAGCGCTTGGAGGATTCATACGGCAGGATGTAAACATAAAAGCGCCTTTTCTCCTGCACCAGAACAAGTGTTAAAATCGGAGACGAAAGAGAATTTTACTAATATGGGAATTGTCAGCAAACCGTTGTTTGAGTTAATAAGAGGAGTTAAGTAA
- Protein Sequence
- MHVRNHEGTTNYKCEICQKAFTVSTHAMEHKNFHTGETPFVCEICGKKFMFSKRLDEHRKRSHYEVLTGQPLVKFDCQICNKHYSSSSGLRRHNIFKHKATGIDFSVVCDICGKRISSKDKLKYHLRTHTGYKPHSCYVCTKSFCKKDQLVDHIRTHTGEKPHICKLCGKGFAQRTPLKTHEKTHYIDRSGCFCKVCGNIKLEIDIEEATLRAETYNSPKSKKRRRSRRKNQNPKEVMNHPPPLKLEEPIKCNSCNETFNNNVVFAIHSLNHSKDKKYTCHMCKYRTNARYQIEMHVRAHEGTTKYKCEICYKAFTVSCHAVEHKNFHTGEKPFLCEVCGKDFMFSWRLDAHRKLCHYQVLTGKPLKSFDCTKCNKHYKSSSGLHWHNITKHKTTKIDLSLICEICGKKFASRTVLKYHLRIHTDYKPYSCHVCTKTFSRKEHLVQHIRTHTGEKPHICKLCGKGFTQRTPLKTHEKIHNQERIKLKQPKSRLKREPKEKKEKPIKDDLEEKRPKREGKKRGRYRQTSPLPEPTKLEEPLQCTQCKEEFYTNLDFAMHSIDHSTESKYSCHLCNFHNLCKYRFETHVRLHDGSTKHKCKICGKAFRCNTHAEEHKYFHTGERPFQCEICGKHFMYSRRLANHRRNIHYQTITGKPRVKFDCEYCDKKFDSIAGLTSHSNKKHLNIVNDISVICEICGKRISCKGRLKYHLRVHSGDKPFSCMVCPKKFAMKDLLIEHTRVHTGEKPYVCKFCGKTFGHRSPYRKKSKKKYKPRARKPKNKENKSSKDIKDEISTDEEEEEKKPKLKKERIPKERKRKKEKEEKVRKRKINEPPVLDEEIQCTKCEESFNTNLGFAIHSIAHRDDCLYHCHLCDTTLKTKYTIETHVRSHDGCLRYKCDICGDYFNVKSELRDHENSHTGSSPYQCEVCGKHFDFQKHLSSHRRSLHAKSKSYDCKICNITYRFPSGLYRHNHLKHKNIDASVICDICGKRLSCREKLKSHQKIHLGYVFPCLVCNKPFTREIQLRVHMRTHTGEKPYVCKFCGKAFKQHSPYRYHIKNHIGLRPHVCGYCGKSFIAKSAWRIHTAGCKHKSAFSPAPEQVLKSETKENFTNMGIVSKPLFELIRGVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -