Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: Ndg_1
Assembly: GCA_963243735.1
Location: OY725337.1:13550904-13615389[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00016 0.027 16.4 2.0 1 23 414 436 414 436 0.96

2 18 5.6e-05 0.0094 17.8 1.8 1 20 442 461 442 464 0.94

3 18 0.00027 0.046 15.6 1.0 1 23 470 492 470 492 0.98

4 18 0.00083 0.14 14.1 4.3 1 21 498 518 498 520 0.94

5 18 2.7e-05 0.0046 18.8 5.7 1 23 526 548 526 548 0.99

6 18 5.5e-05 0.0093 17.8 5.3 1 23 554 576 554 576 0.97

7 18 9.3e-06 0.0016 20.3 7.2 1 23 582 604 582 604 0.97

8 18 2.1e-07 3.6e-05 25.4 2.7 1 23 610 632 610 632 0.98

9 18 0.00016 0.027 16.4 6.7 1 23 638 660 638 660 0.97

10 18 0.00021 0.036 16.0 4.8 1 23 666 688 666 688 0.97

11 18 3.5e-06 0.0006 21.6 3.0 1 23 694 716 694 716 0.98

12 18 7.3e-05 0.012 17.4 8.0 1 23 722 744 722 744 0.98

13 18 6.1e-05 0.01 17.7 9.1 1 23 750 772 750 772 0.98

14 18 3.7e-05 0.0063 18.4 7.7 1 23 778 800 778 800 0.98

15 18 2.3e-05 0.0039 19.0 7.1 1 23 806 828 806 828 0.97

16 18 0.00036 0.061 15.3 0.2 1 23 834 856 834 856 0.97

17 18 0.19 33 6.7 5.0 1 23 866 888 866 888 0.98

18 18 4.1e-07 7e-05 24.5 0.5 1 23 894 916 894 916 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00016	0.027	16.4	2.0	1	23	414	436	414	436	0.96
2	18	5.6e-05	0.0094	17.8	1.8	1	20	442	461	442	464	0.94
3	18	0.00027	0.046	15.6	1.0	1	23	470	492	470	492	0.98
4	18	0.00083	0.14	14.1	4.3	1	21	498	518	498	520	0.94
5	18	2.7e-05	0.0046	18.8	5.7	1	23	526	548	526	548	0.99
6	18	5.5e-05	0.0093	17.8	5.3	1	23	554	576	554	576	0.97
7	18	9.3e-06	0.0016	20.3	7.2	1	23	582	604	582	604	0.97
8	18	2.1e-07	3.6e-05	25.4	2.7	1	23	610	632	610	632	0.98
9	18	0.00016	0.027	16.4	6.7	1	23	638	660	638	660	0.97
10	18	0.00021	0.036	16.0	4.8	1	23	666	688	666	688	0.97
11	18	3.5e-06	0.0006	21.6	3.0	1	23	694	716	694	716	0.98
12	18	7.3e-05	0.012	17.4	8.0	1	23	722	744	722	744	0.98
13	18	6.1e-05	0.01	17.7	9.1	1	23	750	772	750	772	0.98
14	18	3.7e-05	0.0063	18.4	7.7	1	23	778	800	778	800	0.98
15	18	2.3e-05	0.0039	19.0	7.1	1	23	806	828	806	828	0.97
16	18	0.00036	0.061	15.3	0.2	1	23	834	856	834	856	0.97
17	18	0.19	33	6.7	5.0	1	23	866	888	866	888	0.98
18	18	4.1e-07	7e-05	24.5	0.5	1	23	894	916	894	916	0.97

Sequence Information

Coding Sequence: atgaATAGTGATAATCAGAATAATATTTTACCTACAGTGGGTACATCAAACTCTGAAggttcATCACAAAGGAATCCATCGACTACATCGGTACCAACGGATTTAAGAGTGAATACGACAGCTTTAAATGCTGTAGCTTTAAGTAATGTTGCTAAATACTGGGTGTTGACGAATTTATTGCCAGGACCGATACCGCAAGTTTCTGTTTACGGTTTGCCTGGTGCTGGTAGAGAAGGACAAGGAAAAATTTCACAAGATGCCATACTCGGTCAACACAGTTTCCTACAAACCGATCCGTTACTCATTCAACAACATACTCAAATCCCAGTTAGTATAGCAACATCGTCTCAAGGCACTCTGGGATTATCGACGAGCGGAGTACATTTGGAAAATACGCATACGCATACGCATTCACATTCGCATACGCATATTTCCAGTCATCATTCCAGTGAAAATTTATCTACGCAAAATTCCAGTCAAATATCGAGGGATATGCGGCTATCACATTCCCACCACCAGAATCAATCACAGCAACACCAACAACAACAACAGCAGCAACAACAACAACAGCAACAACAGCAACAACAACAGCAACAGCAACAACATCACCATCAGCAAAATTTAGTTCAAGTACAAGTTCAAGATAATTTAGTATCTGTTATAGAAGATAGTAAAGATCATAAAGATATAATATCTGCGCAGCTGCAGGCGGCTCAGCTTCAAATTACAGAAAATCATATAGGGCAACAAGCTTTGAGTGTACAACAATTGCAACATTTGCAAGTTCAACAAGTTTTGGAAAATGtgGTCCGTTTGGAAAACTCCGTGGAAAACAACCAAAACCAATCGAACAACGATCATCAAGAATCTCTAAACGACACCATCCAAATAGTGAAAGACGAAAAATCGTTTCCGAATTGTAAATTAGTATCTGGAGCTGCTGCTCAATTCGGTGGTCTCCAAGATCTCAAAGCCAACATGATGGACGTAAGAACGGCCGACGGCAGCATCGTCAAAATTCAAACGAACATGCAAGAACAGGAGGTCGTCAAGACGCTCGCGTCGATATCGTTAATAACATGTACAGATCTATCAACGACCAATCCCCCACCAACCCTAACCCAAACCAACAACCTAAACCTAACCAATCCCAACATAATAATAACCAAAGACGAACAAGAACCATCAACGAGCACCATAAACACCAACGCCGAAAACCTACCAACAGTCATAGCGACACACGCATGCGATTTATGCGGTAAAATGTTCCAATATCGTTACCAATTAATCGTCCATAGACGTTATCATACCGAAAGGAAACCGTTCACTTGTCAAGTATGCGGAAAAGCGTTTAGTAACGCTCAAGAATTAACGAGACACGGGAAATGTCATTTAGGTGGGAGTATGTTTACTTGTGCCGTTTGTTTTCATGTTTTCGCTAATGATGCTTCTTTGGAGAGGCATATGAAGAGGCATTCGACCGATAAACCGTATGCTTGTAATATTTGTTCAAAGACGTTCGCTAGGAAGGAACATTTGGATAATCATACGAGGTGTCATACTGGGGAAACTCCTTAtagATGTCAATACTGTACAAAAACATTCACTCGAAAAGAACACATGGTGAATCACGTAAGAAAACATACCGGGGAAACCCCGCATCGATgcgaaatttgtaaaaaatcttttacaaGAAAAGAACATTTCATGAATCACGTGATGTGGCATACAGGAGAAACGCCCCATCATTGTACCATTTGCGGCAAAAAATATACCAGGAAGGAACATTTAGCTAATCATATGAGAAGTCATACCAATGATACGCCATTTAGatgtGAAATTTGTGGTAAATCATTCACGCGTAAAGAACATTTCACGAATCACATAATGTGGCATACAGGCGAGACGCCGCATCGTTGTGATTTTTGTTCGAAAACTTTTACAAGaaaagaacatttattaaatcacGTTAGACAACATACAGGGGAATCACCGCATCGATGCGGTTTTTGCGCTAAATCTTTTACTAGAAAAGAACATTTGATCAACCACGTTAGACAACatacaggtGAAACACCATTTAGATGTAATTTTTGTCCGAAAGCTTTTACTAGAAAAGATCATTTAGTAAATCACGTTAGACAACATACAGGGGAATCACCGCATAAATGTACATTTTGTACGAAATCGTTTACAAGAAAAGAACATTTAAATAATCACGTACGTCAACATACAGGGGAATCACCGCACAGATGTCACTTTTGTTCGAAATCTTTTACACGGAAAGAACATCTCACTAATCATGTTAGAATTCATACagGCGAATCCCCACACCGTTgcgaattttgtcaaaaaacttTCACCCGCAAAGAACATCTGACCAATCACCTGCGACAACATACCGGAGAAACGCCGCATTGTTGTAACATTTGTTCGAAACCGTTCACCAGAAAAGAACATTTGGTGAATCACATGCGATCGCATACAGGCGAACGACCGTTCGCGTGCGGCGAATGCGGAAAATCGTTTCCGCTCAAAGGAAATTTACTGTTCCATCAGCGGTCGCATAATAAAGGAGCCGGAGCCGAAAGGCCCTTCAGATGTGATCTATGTGAAAAGGATTTCATGTGTAAAGGTCACCTCGTATCACATAGAAGATCACATATGAATGATCGACCTCACGTATGTCCGGATTGTGGAAAGGCGTTCGTCGAAAAGGGTAATTTATTACGTCATTTAAAGAAACACAATACCGATAATGCCCAAGCGCAAGCCAATGCACCACAagGAACTACCTCATCGCAACAAAACAACCAATCGGCGACCACCGTAGCTAATATCCAAATTCCGCAAGTACACGTTAGCCAGGGCGGTGgccaacaacaacaacaacaaggCCAACTACAAGGTTCTACAAATTTCAATCCGTGCGAAGAAGGTCGCTCGCAATGCACGGACAACAGCACGTGCGTCGTAGAAAACGATTCGTTCCGATGCATCTGTAATCCGGGCTATCAAACCgtcaacaacaacaacaacaacaacaacaacaacgaagaaaacaacaaaacaacGTGTATCGATATAGACGAATGTCAATTGGGACAACACGAATGCGATTATAATGCGCAATGTATAAATTCGATCGGTAGTTACGATTGTCGATGTAATCCCGGTTACGAAGGTAACGGTCGAATGTGCGATAATGCCAGATCGTGTAAAACTATCGATTGTTACGAAAATTCTGGATGCGTCGAAAATAATGGAATTGCTAGTTGTAAATGTTTGGCTGGATTTAGGGGAGATGGACAATATTGTACGCCAATCGTTGATCACAGCTGTCAAATTGACAATAATTGTTCTCCTTTCGGTTATTGCGCTGTAAAACCGGAAACCGGAAACTATTATTGTGCTTGTTTACCGGGTTATTTAGGCGACGGTTATAGATGTCTTCAAATTGAAACTACTACGTCACTTCCGATTACTACGATTACAGGAATTGAAGATACTCAACATCCAGatCAGGAAATTATTCAATCTTGTACAAACGAAGGATGCTATTGCCCATCAGGATACATAATAGAACCTGAAACCCCATATTGTATTCTCGAAACCGTAACAGTACCAATTGAACCAATTCCAAGAACCACAACCACAGAAAAACCACAAGgttGCGGTACCTGTCACCCGAACGCCTCCTGCGTCTATTCAGACTTTTCGCACGATTACGAATGCACGTGTAACGACGGTTTGGAAGGGAACGGGTACACGTGCGAACCGGAATTAGTATCTTGTACTAAAGTCGATAACTGTCATCCAGAAGCTACTTGTACTTATAACGAAACTATAGGAAAATCGAAGTGTACCTGTAATCCCGGGTTCCAAGGAGATGGTTATAACTGCATTATTGTCGcaaGCTGCACTTCCAATCAAGATTGTACAGCTACAGAAGAATGTATTATTACGTCATCAAAAAAATACGAATGTATATGCAAAGAAGgtTACGTTCGAGATTCCCAACATCAATGCGTCATCATATACACCTGCGGTGGCGGTAAATGCGTTGAAAATGCCGATTGTTTATACGACGACGAATACCAAACGTTCTATTGTCAATGCAAATCCGGTTACGTCGGAGACGGTATAACCGAATGTAGAGAAAAAATTATCGGATGTGATACGCTCAATAATTGCGGAGCGTACGCTACGTGTAAATACGTCGAAGAAGAATTGACGTATAAATGTCAATGTCAAGATGGATTTTTTGGTAACGGTTTTTTGTGTTACGCTGAGAAAAATTGTCATGTTGATCCTTCGATGTGTTCTAAACATGCCGTTTGTCTTACCgattcgaATCGAAATTTCCTTTGTCAATGTAACGTCGGTTTCGTCGGTAACGGCACCATCTGCAAGGAAATATCACGACACGAAGGCaattatcttttattaaatcaaGGTATGGCCACATTAAGGATACCGCTCGACCAATCGAAACCGCAATCTAAGAAACCGATACAAGTCAAGGCCTATCAGACCGCTGTCGGTTTGGACGTCGATTGTTTGGAGGGGAGAGTTTATTGGAGCGATATTAGTGGTAGGGTTATTAGGAGTTCGCTATTGGATGGAAGCGATAAAAAAGATTTTGTACTTcaaggTATCGGTTCACCGGAAGGTCTAACAATCGATTGGATATCCCGTAACGTGTATTGGACCGATTCAACTCTAGATACAATCGAAGTATCGAATATCGAATCGGGTCTACGTCGAACGCTTTTCAACACCGATTTAATAAATCCTAGAGGAATAGCTGTACATCCGCAACGTGGAAAAATCTTTTGGGCCGATTGGGATCGTAAAAATCCTAAAATCGAATGGGCCAATGCCGACGGTACGGATCGACGGTTATTTTTAGGTTCGCCGGATGTTTCGTTACCGAATTCGTTAACGATCGATTTCGATACGGAACATTTGTGTTACGCTGATGCTGGTACTAAGAAAATCGAATGCGTACAAATCGATAATAAATTTAAGCAAACTATTGCTACGAATTTGACGTATCCGTTCGGTATTAGTACCACTGATAGGGAGATTTATTGGTCCGATTGGATtacgaaaaaaatcgaacgagtggataaaaaaactttaacaagATTACCATCATTACCGGTACCATTGGGCGGTACTGGTAATCGGTTATTTGAACTTGTCGCTGTACCAAATAGTTGTCCAACATTAGCTAATGTCTGCGAGTACTACAAAAATCAATGTCCAAAAGATCATATTTGTTTACCGAATGGTTTGGGCGGGAAACAATGTTTATGCGGTTATCCGGCCGAGGATCCTGAACAAAAAACGAGttgtattttttag
Protein Sequence: MNSDNQNNILPTVGTSNSEGSSQRNPSTTSVPTDLRVNTTALNAVALSNVAKYWVLTNLLPGPIPQVSVYGLPGAGREGQGKISQDAILGQHSFLQTDPLLIQQHTQIPVSIATSSQGTLGLSTSGVHLENTHTHTHSHSHTHISSHHSSENLSTQNSSQISRDMRLSHSHHQNQSQQHQQQQQQQQQQQQQQQQQQQQQQHHHQQNLVQVQVQDNLVSVIEDSKDHKDIISAQLQAAQLQITENHIGQQALSVQQLQHLQVQQVLENVVRLENSVENNQNQSNNDHQESLNDTIQIVKDEKSFPNCKLVSGAAAQFGGLQDLKANMMDVRTADGSIVKIQTNMQEQEVVKTLASISLITCTDLSTTNPPPTLTQTNNLNLTNPNIIITKDEQEPSTSTINTNAENLPTVIATHACDLCGKMFQYRYQLIVHRRYHTERKPFTCQVCGKAFSNAQELTRHGKCHLGGSMFTCAVCFHVFANDASLERHMKRHSTDKPYACNICSKTFARKEHLDNHTRCHTGETPYRCQYCTKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCAKSFTRKEHLINHVRQHTGETPFRCNFCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNICSKPFTRKEHLVNHMRSHTGERPFACGECGKSFPLKGNLLFHQRSHNKGAGAERPFRCDLCEKDFMCKGHLVSHRRSHMNDRPHVCPDCGKAFVEKGNLLRHLKKHNTDNAQAQANAPQGTTSSQQNNQSATTVANIQIPQVHVSQGGGQQQQQQGQLQGSTNFNPCEEGRSQCTDNSTCVVENDSFRCICNPGYQTVNNNNNNNNNNEENNKTTCIDIDECQLGQHECDYNAQCINSIGSYDCRCNPGYEGNGRMCDNARSCKTIDCYENSGCVENNGIASCKCLAGFRGDGQYCTPIVDHSCQIDNNCSPFGYCAVKPETGNYYCACLPGYLGDGYRCLQIETTTSLPITTITGIEDTQHPDQEIIQSCTNEGCYCPSGYIIEPETPYCILETVTVPIEPIPRTTTTEKPQGCGTCHPNASCVYSDFSHDYECTCNDGLEGNGYTCEPELVSCTKVDNCHPEATCTYNETIGKSKCTCNPGFQGDGYNCIIVASCTSNQDCTATEECIITSSKKYECICKEGYVRDSQHQCVIIYTCGGGKCVENADCLYDDEYQTFYCQCKSGYVGDGITECREKIIGCDTLNNCGAYATCKYVEEELTYKCQCQDGFFGNGFLCYAEKNCHVDPSMCSKHAVCLTDSNRNFLCQCNVGFVGNGTICKEISRHEGNYLLLNQGMATLRIPLDQSKPQSKKPIQVKAYQTAVGLDVDCLEGRVYWSDISGRVIRSSLLDGSDKKDFVLQGIGSPEGLTIDWISRNVYWTDSTLDTIEVSNIESGLRRTLFNTDLINPRGIAVHPQRGKIFWADWDRKNPKIEWANADGTDRRLFLGSPDVSLPNSLTIDFDTEHLCYADAGTKKIECVQIDNKFKQTIATNLTYPFGISTTDREIYWSDWITKKIERVDKKTLTRLPSLPVPLGGTGNRLFELVAVPNSCPTLANVCEYYKNQCPKDHICLPNGLGGKQCLCGYPAEDPEQKTSCIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -