Ntra005311.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- ken_2
- Assembly
- GCA_963243735.1
- Location
- OY725336.1:26012165-26020703[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.3 50 6.1 1.5 1 23 118 140 118 140 0.93 2 24 0.12 21 7.3 0.4 1 23 146 169 146 169 0.93 3 24 0.0076 1.3 11.1 0.1 2 23 176 199 176 199 0.96 4 24 2.4 4.1e+02 3.2 0.0 2 23 206 227 205 227 0.94 5 24 0.00027 0.046 15.7 2.0 2 23 239 260 238 260 0.95 6 24 0.00028 0.048 15.6 0.6 1 23 282 304 282 304 0.98 7 24 2.4e-06 0.00041 22.1 3.2 1 23 310 332 310 332 0.98 8 24 3.3e-05 0.0056 18.5 0.7 1 23 338 361 338 361 0.96 9 24 0.0052 0.89 11.6 2.6 1 23 371 394 371 394 0.96 10 24 1.4e-06 0.00024 22.8 3.0 1 23 451 473 451 473 0.99 11 24 9.9e-07 0.00017 23.3 2.4 1 23 479 501 479 501 0.99 12 24 0.014 2.3 10.3 0.6 2 23 506 527 505 527 0.97 13 24 0.12 20 7.4 0.1 2 21 536 555 535 556 0.91 14 24 0.00049 0.083 14.8 4.2 1 23 605 627 605 627 0.97 15 24 8e-05 0.014 17.3 2.8 1 23 633 655 633 655 0.98 16 24 2.8e-07 4.8e-05 25.0 1.3 1 23 661 683 661 683 0.98 17 24 0.05 8.5 8.5 1.4 1 23 689 712 689 712 0.96 18 24 0.87 1.5e+02 4.6 1.1 5 21 887 903 884 904 0.89 19 24 0.00016 0.027 16.4 6.1 1 23 935 957 935 957 0.98 20 24 0.00038 0.064 15.2 0.3 3 23 962 982 961 982 0.98 21 24 2.6e-05 0.0044 18.9 2.1 1 23 991 1013 991 1013 0.98 22 24 1.4e-05 0.0024 19.7 3.0 1 23 1019 1041 1019 1041 0.98 23 24 2.8e-05 0.0047 18.8 0.6 3 23 1050 1070 1048 1070 0.97 24 24 8.9 1.5e+03 1.4 3.8 1 23 1076 1099 1076 1099 0.82
Sequence Information
- Coding Sequence
- ATGTTGACAACTAGTCATTTAAATTCTACTTTTGAAGAAAACGATTTAACAACTTATTTAATCATACCTTTTGActctcttaaaaattctgatGATTTTACTCAGCTTAGAGTTCATCCAGATGGTACATTATATATTGTTAATGGCGAAGATCAACAGcTTCAAGATAAGCCACTTTTACCTGCTTTGACGAATGAAATTATAGATGTTATAACTGATCAAGCTAGTACTTCGACACCTGAAACATCATCCTCACTTGTGCAGATTCCTGTAAAACCTATTTCGGAACctaatattgtcaaaaaagaTTCATTTATAGGGAATATTCTTCCGGCACCTTCAGAAGTTAaatataattgtattaaatgCGAAAGCAGCTTTACAACCGATAAAGAATATAAGAATCATCTAAAATGgcataaatctcaaaaaaactttaaatgtaCAAAATGCTCTGCAGGTTATAATATtgagaacaatttaaaaattcatactacACTAATTCATCCCGAAGGAACTATAAATAGTTGCCCAATTTGTGGTGTTAGTTTAACATTTCAAAGAGCTGCAAGTTTGAAATCACATTTAATGGTGCATTTAGTTGAAGAATTACAAACTTGTGATGAGTGTGATGCTGAAATTGAAAAAGTGgaTGAGTACGCCCAACATATGTTAGGGCATGCATCAAAAACCAAAAGCGATCAAGAATCTTTGACTTGTTCACATTGTGATGttgaatttaaaacaaaacaacagCTGAAACTGCACATTTCTGACCACACTAAGGCTTGGaagtattttaagaaaaaaaaagttaaaacgaTACGTTCGCAAGAAAAAAGATATAACTGTGGAatatgcaataaaaattttctcaaGCAATCACTACTTGAAAGACATGAGCGCATACATAGTGGAGAAAAGCCATTTAAGtgtaaTATTTGTGATCAATGCTTTACACAAAAGGGTACTCTGCGCATTCATTTACTGCGACATACAGGAAATAAACCCTTTGCTTGTACTTTATGCTCTGCTAAATTTAgtcaaaaagGTAACTTGAGGGTGCACATAAATAAAACTCATACGGCCCCCAACGAGggacaaaaaatgttcaaatgcCCACACTGTTCCTGCATTTTCAAAAGAATAGCTTCTTTAAACGGCCATGTAACTAAAGCTCATTTGAAGTATCGCTTCACTGAAGAAGATCTAATAGGACatgtgatgaaaaatttgaaggaCCTTGAGGAGAATACTTTCGATTCGTACGTCACATTAACTGAGTCCACACTTGAGGGAGTGGAGAAgaaattcgttgttcaaatgaAGAGAATCGGGGAGGTCAGGTGGTACAAATGCTCATATTGTTCAAAAATGTGTAAGAAGCCTTCGGATTTAATTAGACACATTAGGGTTCATACTAGAGAAAGACCTTTTAcatgtaaaatCTGCAGGAAATCTTTTTCGCTTAAGTCTACATTGATTTCTCATATGAACACgcatagtaaaaatataaaatgtaaactTTGTGATTCTGTTTTTGggtcgaaaaaaatcttaaacctACATATAAGaaaacatGAAAAGGAGAAACTGTCAAAATGGCAATGTACAACTTGCGGAGTTGTATTTGATAAATATGATGACGCGTTGCGGCATAAAATGTCTCAAGATGAACCTCATCCTTTCCAATCTATGGCGAATAAAGCAATGAAACAACCATTGTACCAGACTctatatgGTAATTTGACGTTTAAACCACCCAGACTGAAAGTACCTAATACTGGAAATGAAAATTCCTTACTAAGACCATTTCATTGCCTTATATGTGATGCgagatttactaaaaaaattaatttaaaaaggcACACGAAGTATCATGAAAATGACAGGAGGTTCAAGTGCCATTTATGTTCAAAggcgTTTATAACTTCCTATAGGTTAAAAGAACATATTAACTtgcataataatataaaaaactacGCTTGTAAGGTTTGTAATAAAAGATTTGGAACTTCTACCAATTTGAGAAGACACATGATTACTCATAATACTAGAAAGCCGTATTTTTGTCcatattgtttgaaatattttcaaacacTAGATTTGAGCAGGCGCCATATTAAGAGTGTTCATAAAAAGGATATTATAAAGACAATTgaTTCTGAGATCGACGCTCGAaaaaaaactatggaaaatggaATTTGCAGTGAAGCTACTAGCGTTATTATGAGTAGTGAATCACCCAAAACTGAAACTGATCTGGGTTTAAGTACTGAGGGTAAACCAGTTCAACAAATTCTACTGGATGAAAATACACAACAATCtcaaattttattgcaagattCCAGTACAggtttacaaacattttatgttaatttggaaaatatccAACTTATTGATAATTCCGGTGTTAATCTAAGCTCATTTGTGGAGAATACAGCTAATGAAGAACCTTTTCGATTACCTACTACTGACCTtccagaaaaaaaccaaaaccaaCAAAATCAGGAATTAATGTACAGTCCCACTCAACCAACAAGCGCACTGAATTTGGCAACGCCAGAGGCGATCTTTGATGGCAACACCATAGTCCAGCCGTCTGTAGGTCTAAATGAAAGCAGAAATATCTTCGATGATGCCAGTATAATATGCATAAACTgcaataaaatgttttctaattttgtccGTTTCCAAAAACACGTTTGCATCAACAAAGAACAGATAGCTGAAAAAGATGAAGAAAATAATAGCGATAAGAATGTAGAgaaagaaattgttttaatgaaaaatttgaaaaaatttgagtgTCCCTTTTGTCATAAATCATACAGGAAGAAACTTAGTTACAAAAATCACATGAAAACCCATCCTAACATGCTATGTTTGATATGCAAGCAGATGTTTTCAGACAAAGATGATTATCTGGAGCATATGGCTACACATAATACGTCTACTGGTACTAATGAGTATATGTGTgtattttgtatgaaaaaattcaagaaacctTCCGATTTGACACGTCATATTCGTACCCACACAGGAGAAAAACCCTTTAACTGTGAAATTTGTGATAAAAGGTTTTCTCTAAAATCGACCCTCAAGTCTCATTTCAAAACTCACAATCCTAACCATAAACACTTCGGCTGTGCCATctgcaatacatttttttcttcaaaaagtAGCTTAAAAGTCCACATGACTATTCATACAGgaCAATTACCTTATTCCTGTTCAATAtgcaaatcaaaatttagaACTATTAGTGCGAGAAAATGCCATGAGAAAAAAGGACATCGTCAAGTATTGAAGAAAAACGCTGTAAAACCAGCCAAAAGCAgcatttccaatattttgaacaCCTTGTCAACCAATATCAACaccgagaaaaataatgaagataatATACAAGTTGAATCAGAATATGTACCCCTGGAAAACTTAGGACTGATTATGACTGAAAATAACGTAAGCATAtttacattaataatataa
- Protein Sequence
- MLTTSHLNSTFEENDLTTYLIIPFDSLKNSDDFTQLRVHPDGTLYIVNGEDQQLQDKPLLPALTNEIIDVITDQASTSTPETSSSLVQIPVKPISEPNIVKKDSFIGNILPAPSEVKYNCIKCESSFTTDKEYKNHLKWHKSQKNFKCTKCSAGYNIENNLKIHTTLIHPEGTINSCPICGVSLTFQRAASLKSHLMVHLVEELQTCDECDAEIEKVDEYAQHMLGHASKTKSDQESLTCSHCDVEFKTKQQLKLHISDHTKAWKYFKKKKVKTIRSQEKRYNCGICNKNFLKQSLLERHERIHSGEKPFKCNICDQCFTQKGTLRIHLLRHTGNKPFACTLCSAKFSQKGNLRVHINKTHTAPNEGQKMFKCPHCSCIFKRIASLNGHVTKAHLKYRFTEEDLIGHVMKNLKDLEENTFDSYVTLTESTLEGVEKKFVVQMKRIGEVRWYKCSYCSKMCKKPSDLIRHIRVHTRERPFTCKICRKSFSLKSTLISHMNTHSKNIKCKLCDSVFGSKKILNLHIRKHEKEKLSKWQCTTCGVVFDKYDDALRHKMSQDEPHPFQSMANKAMKQPLYQTLYGNLTFKPPRLKVPNTGNENSLLRPFHCLICDARFTKKINLKRHTKYHENDRRFKCHLCSKAFITSYRLKEHINLHNNIKNYACKVCNKRFGTSTNLRRHMITHNTRKPYFCPYCLKYFQTLDLSRRHIKSVHKKDIIKTIDSEIDARKKTMENGICSEATSVIMSSESPKTETDLGLSTEGKPVQQILLDENTQQSQILLQDSSTGLQTFYVNLENIQLIDNSGVNLSSFVENTANEEPFRLPTTDLPEKNQNQQNQELMYSPTQPTSALNLATPEAIFDGNTIVQPSVGLNESRNIFDDASIICINCNKMFSNFVRFQKHVCINKEQIAEKDEENNSDKNVEKEIVLMKNLKKFECPFCHKSYRKKLSYKNHMKTHPNMLCLICKQMFSDKDDYLEHMATHNTSTGTNEYMCVFCMKKFKKPSDLTRHIRTHTGEKPFNCEICDKRFSLKSTLKSHFKTHNPNHKHFGCAICNTFFSSKSSLKVHMTIHTGQLPYSCSICKSKFRTISARKCHEKKGHRQVLKKNAVKPAKSSISNILNTLSTNINTEKNNEDNIQVESEYVPLENLGLIMTENNVSIFTLII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -