Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: -
Assembly: GCA_963243735.1
Location: OY725337.1:20764963-20776294[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.00015 0.025 16.5 5.5 1 23 10 32 10 32 0.97

2 25 0.00052 0.089 14.8 1.8 1 23 38 60 38 60 0.98

3 25 0.0018 0.31 13.0 0.4 2 23 67 89 67 89 0.94

4 25 0.00013 0.022 16.7 1.9 1 23 94 116 94 116 0.96

5 25 0.011 1.9 10.6 2.5 2 23 127 149 126 149 0.95

6 25 2.1e-05 0.0036 19.1 1.3 1 23 156 178 156 178 0.98

7 25 2.8e-06 0.00048 21.9 0.5 2 23 185 206 184 206 0.97

8 25 4.9e-07 8.4e-05 24.3 2.1 1 23 212 234 212 234 0.98

9 25 1.9 3.3e+02 3.5 0.2 1 15 240 254 240 257 0.84

10 25 0.36 61 5.8 7.0 1 23 320 342 320 342 0.97

11 25 0.0017 0.29 13.1 3.3 1 23 377 400 377 400 0.97

12 25 0.00079 0.13 14.2 0.8 2 23 411 433 410 433 0.89

13 25 0.0013 0.22 13.5 0.7 3 23 443 463 442 463 0.99

14 25 0.00013 0.021 16.7 4.7 1 23 469 491 469 491 0.98

15 25 6e-07 0.0001 24.0 0.2 1 23 497 519 497 519 0.98

16 25 3.8 6.5e+02 2.6 1.5 1 10 525 534 525 538 0.86

17 25 0.025 4.3 9.4 0.4 2 23 642 663 641 663 0.93

18 25 0.092 16 7.7 4.4 1 23 669 691 669 691 0.98

19 25 0.0032 0.54 12.3 1.6 1 23 697 719 697 719 0.91

20 25 0.001 0.18 13.8 2.5 3 23 727 748 725 748 0.98

21 25 0.00044 0.075 15.0 3.3 1 23 760 783 760 783 0.93

22 25 0.0025 0.43 12.6 1.9 3 23 794 814 793 814 0.99

23 25 5.3e-07 8.9e-05 24.2 1.1 1 23 820 842 820 842 0.98

24 25 2.8e-07 4.8e-05 25.0 1.2 1 23 848 870 848 870 0.99

25 25 0.002 0.34 12.9 0.1 1 22 876 897 876 897 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.00015	0.025	16.5	5.5	1	23	10	32	10	32	0.97
2	25	0.00052	0.089	14.8	1.8	1	23	38	60	38	60	0.98
3	25	0.0018	0.31	13.0	0.4	2	23	67	89	67	89	0.94
4	25	0.00013	0.022	16.7	1.9	1	23	94	116	94	116	0.96
5	25	0.011	1.9	10.6	2.5	2	23	127	149	126	149	0.95
6	25	2.1e-05	0.0036	19.1	1.3	1	23	156	178	156	178	0.98
7	25	2.8e-06	0.00048	21.9	0.5	2	23	185	206	184	206	0.97
8	25	4.9e-07	8.4e-05	24.3	2.1	1	23	212	234	212	234	0.98
9	25	1.9	3.3e+02	3.5	0.2	1	15	240	254	240	257	0.84
10	25	0.36	61	5.8	7.0	1	23	320	342	320	342	0.97
11	25	0.0017	0.29	13.1	3.3	1	23	377	400	377	400	0.97
12	25	0.00079	0.13	14.2	0.8	2	23	411	433	410	433	0.89
13	25	0.0013	0.22	13.5	0.7	3	23	443	463	442	463	0.99
14	25	0.00013	0.021	16.7	4.7	1	23	469	491	469	491	0.98
15	25	6e-07	0.0001	24.0	0.2	1	23	497	519	497	519	0.98
16	25	3.8	6.5e+02	2.6	1.5	1	10	525	534	525	538	0.86
17	25	0.025	4.3	9.4	0.4	2	23	642	663	641	663	0.93
18	25	0.092	16	7.7	4.4	1	23	669	691	669	691	0.98
19	25	0.0032	0.54	12.3	1.6	1	23	697	719	697	719	0.91
20	25	0.001	0.18	13.8	2.5	3	23	727	748	725	748	0.98
21	25	0.00044	0.075	15.0	3.3	1	23	760	783	760	783	0.93
22	25	0.0025	0.43	12.6	1.9	3	23	794	814	793	814	0.99
23	25	5.3e-07	8.9e-05	24.2	1.1	1	23	820	842	820	842	0.98
24	25	2.8e-07	4.8e-05	25.0	1.2	1	23	848	870	848	870	0.99
25	25	0.002	0.34	12.9	0.1	1	22	876	897	876	897	0.95

Sequence Information

Coding Sequence: ATGACATCTCATAGTAACGAAAGACCACATTCTTGCGAAGTCTGTCAAAAACGCTTTAAAAGAAAACACGAAGTCTCTAACCACATGAAAATCCACAACGGTGCCGTCAAATTCGAATGCGATTTCTGCTCAAAAAACTTAAGATCTAAAGGATCCTTAAACATCCACAGGAAACGGCATTTAAAAGAATTTGTAGCAAAATGCGAAACTTGCGATCAAGGGTTCGTTACTAACCAGGAATACCAAAATCATATAGGATCCAAGCACGGCAACACAAATCATATATGCAACATTTGCGGCCGAAGCTGTTATGACAAAGCTTCTCTCCAAGGCCACATGGTACGTCACAGCAAAGGCTACAACTCGAATACCGATATCAAATGTGAACTTTGTGACAAAACTTTTCTTCAAGAACGATACTTAAAGCATCATTTTATGAGGGTACATAAGAACGGCGGGCAAAGGTACGTCTGTGATCATTGCGGAAAGAAAGTTAATTCTAAGCGTAGTCTTAGAGACCATCTTTTGATTCACAAAGGACTAAAGCCTATTGAATGTAAAGAATGCGGTAAAGGTTTTGCTTTAAGAACTACGTTGAAGTTGCACATGCGGACACATACTGGCGATAGGCCGTATGAATGCCCTCAGTGTGGGAAATGCTTTACTCAAAAAACTCCTCTTACAGTACATTTGAGATATCACAGCGGTGAGAGACCTTATAATTGTCCAATATGTAATGCCGGGGTAAAACggaaaaaagagaggaaaagGTCCAAATCCAAGGTCAAAGTAGTTAAAGAAGAAATCACGATAGAAGATATCAAactagaagaaaaatttaactcAGTTGTCGCAGAAGAAAACTATTTAAAGTTTTCGTGTGAACTTTGTGCCGAAAAAATTCCTTCGAGCGTCTTATATGCAATTCATTCAGTCAAACATTCTCTTGACAATAAATATCACTGCCACTATTGTAACTTCAAAACTTCTAAAGTTAAGGGAATGGCCAAACATATGAGGTTTCATGGTAACGACGGCAAAGAATTTCAATGCCTAATATGTATGTTGTCATTTCCAGAGTGTATACAGGCtatagaacataaaaatttccattcTGGAGAAATGCCCTATAGCTGCGACGTTTGCGATAAACATTTCATGTTTTCTTGGTTGCTTTTTACACATAGGAGATTGTTCCATCCCAATATGAAAGATGATCCTTCTACATTAATCTGCGATATTTGTAATATGTCGTTTGGTACAAGATCTGGTTTAAGAAAGCACAATTTTCGCAAGCACAATAAATGTCCCATGGAACCTCCTTTGTGCGAAATTTGCGGGAAAAGTCTAGCTAATAACGAAACTTTAAAATTCCACAGGCGAACTCACACGGGTGAGAAACCGCACACTTGTATGACTTGTGGaaaatgttttagaaaaaaaggactCTTGGTCGAACATGAAAGAACGCATACAGGAGAAAAACCATTTGTTTGTCCTTATTGCCAAAAAGCTTTTTCCCAAAGAGCTCCCCTGAAGATCCATCAAAGGATTCATACAGGAGAGCGGCcttatatttgtaaattttgcgGAAAGGGgtACTTCAACACAAATATTCTAAACAAGTTACTATTCGGACCTGGCTTAACTATAACACCAATTAAACAAGAAGTATTTGATATTCCCGAATATGCATcctataatgattttaataatcaagctagtaatattaataatgtaaatGGACTCAACGGATCTGTGAAGGATAATGACCCAATAGATCCAGACATATCCATTATTCCAGATGTCACGAAATTGATAacggaaaatatattaaactgcctacaaaaaaaatccaaaaagaagCCTAAAGCTGTGGAGAAAATTCAGAACCCTCCACCTGTAGAACGCGATGAACCTATACACTGCGAAATCTGCGATATAACTTACAAAAACAATGTAGCTTTTGCTCTACACTCCGACAAACACAGCGAAGATGGAAAATTCACCTGTCATCTTTGCGATTATAAAAACACTTCCAAGTACCACGTAGAAATGCACATTAGAGCGCATGAAGGTACCACGAAATACAAATGCGAAGTTTGTGATAAAGCTTTCACCGTGAGTACCCATGCGATAGAACACAAGTACTTCCACACTGGTGAAAAACCATTCGGATGCGATATCTGCGGAAAACATTTCATGTTTTCCTGGTTTTTAACATCGCATAGACGCACGCAGCACTGGGAGCTAGTTACTGGAAGTCCTCTAGTCAAGTACGACTGTACAATTTGCAATAAACACTACACTTCCTCGACTGGTTTAAAAAGGCATAATCTCAGTAAGCACAATTCTACCGGAGTAGATCCTTCGGTACTTTGCGATATATGTGGCAAAAGGCTATCTAGTAAAGAAAAGTTGAAGTTTCATAGACGTACGCATACTGGTTACAAGCCTTACTCTTGTGAAGTTTGCACGAAGAGTTTTTCTAGGAAAGAACAATTGAAAGAGCACGAGAGGGTTCATACTGGTGAGAAACCTTATAAGTGTCAGTACTGTGGTAAAGGATTTACTCAAAGGTCACCGCTCAGGATACATGAAAGGACGCATACTGGTGAGAGGCCTTATATTTGCAAAATTTGTAACAAAGGCTTTATATCGAAAGGTGTCATGGATACACATATGAAGACTTGTTCTGGAAGGGATTTAAACTGTTAG
Protein Sequence: MTSHSNERPHSCEVCQKRFKRKHEVSNHMKIHNGAVKFECDFCSKNLRSKGSLNIHRKRHLKEFVAKCETCDQGFVTNQEYQNHIGSKHGNTNHICNICGRSCYDKASLQGHMVRHSKGYNSNTDIKCELCDKTFLQERYLKHHFMRVHKNGGQRYVCDHCGKKVNSKRSLRDHLLIHKGLKPIECKECGKGFALRTTLKLHMRTHTGDRPYECPQCGKCFTQKTPLTVHLRYHSGERPYNCPICNAGVKRKKERKRSKSKVKVVKEEITIEDIKLEEKFNSVVAEENYLKFSCELCAEKIPSSVLYAIHSVKHSLDNKYHCHYCNFKTSKVKGMAKHMRFHGNDGKEFQCLICMLSFPECIQAIEHKNFHSGEMPYSCDVCDKHFMFSWLLFTHRRLFHPNMKDDPSTLICDICNMSFGTRSGLRKHNFRKHNKCPMEPPLCEICGKSLANNETLKFHRRTHTGEKPHTCMTCGKCFRKKGLLVEHERTHTGEKPFVCPYCQKAFSQRAPLKIHQRIHTGERPYICKFCGKGYFNTNILNKLLFGPGLTITPIKQEVFDIPEYASYNDFNNQASNINNVNGLNGSVKDNDPIDPDISIIPDVTKLITENILNCLQKKSKKKPKAVEKIQNPPPVERDEPIHCEICDITYKNNVAFALHSDKHSEDGKFTCHLCDYKNTSKYHVEMHIRAHEGTTKYKCEVCDKAFTVSTHAIEHKYFHTGEKPFGCDICGKHFMFSWFLTSHRRTQHWELVTGSPLVKYDCTICNKHYTSSTGLKRHNLSKHNSTGVDPSVLCDICGKRLSSKEKLKFHRRTHTGYKPYSCEVCTKSFSRKEQLKEHERVHTGEKPYKCQYCGKGFTQRSPLRIHERTHTGERPYICKICNKGFISKGVMDTHMKTCSGRDLNC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -