Ntra037700.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- -
- Assembly
- GCA_963243735.1
- Location
- OY725351.1:278534-280288[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.2e-05 0.002 19.9 1.6 1 23 86 108 86 108 0.98 2 16 0.00029 0.05 15.5 0.6 1 23 111 134 111 134 0.98 3 16 0.00026 0.044 15.7 4.3 1 23 140 162 140 162 0.90 4 16 9.6e-07 0.00016 23.4 1.2 1 23 168 190 168 190 0.96 5 16 6.8e-06 0.0012 20.7 1.7 1 23 196 218 196 218 0.99 6 16 6.3e-06 0.0011 20.8 3.7 1 23 231 254 231 254 0.94 7 16 9.5e-05 0.016 17.1 0.6 1 23 260 282 260 282 0.94 8 16 5.3e-07 8.9e-05 24.2 2.4 1 23 288 310 288 310 0.99 9 16 2.8e-05 0.0047 18.8 2.3 1 23 316 339 316 339 0.97 10 16 1.9e-05 0.0032 19.3 1.6 2 23 348 369 347 369 0.96 11 16 2.3e-05 0.0038 19.0 0.3 1 23 376 398 376 398 0.97 12 16 1.7e-07 2.9e-05 25.7 1.8 1 23 404 426 404 426 0.98 13 16 3.3e-06 0.00056 21.7 1.2 1 23 432 454 432 454 0.98 14 16 2.6e-06 0.00045 22.0 1.9 1 23 460 482 460 482 0.98 15 16 6.9e-06 0.0012 20.7 1.4 1 23 488 510 488 510 0.98 16 16 8.2e-07 0.00014 23.6 1.7 1 23 516 539 516 539 0.96
Sequence Information
- Coding Sequence
- ATGTCTGAAACTAAACCAGTTGCTtatattaaacaagaaattgcATCAAATTCGGAAGAAATGGAACATTTTGAACCTGAAGATTTTGGTTTAGATGACATAATTccagtaaaaacagaaaaaatcaaagaagaaCCCGAAGATGATGATTCCGATTGCGATTCTGATTTTGTTCCCGACGTcccagatattttaaaattaagttttgatGAAGATACTATTAAAACTGAAAGTTTGGATGATGAATCTAGAAAACATCAGTGTAATATTTGTTCTAAAAGATTTCCGTACTTATCAGCCTTAAGACAACACCTAGTTACCcataagaaatataaatgtTCATTTTGTGGtgaagattttggaaaaaaaggtGCTTTATCATATCACTTAAAAAGAGATCATAATATTGAGAAATCTTTTGCTTGTGGTGTATGTCAAAAGAGTTTTTCCagcaaatataaattgaaaagaCATTGTCTGTCGCATacagatgaaaaaaattatttgtgttCTATTTGTTCAAAGGCTTTTAGACAAAGTGGTCATTTACAATCGCACATGTTGGTACATACTGAAGAACGAAAATACGAATGTTTACAATGTTCTAAAGCGTTTAAAGAACAATCCAAATTAAAGAAGCATGTACAGACACATTTAGATAATCCTACAAAagagaaattaaatttgaaatttgagtGCTCAATATGTAACAAAATGTATAGTCAAAAACATCATCTTCAAAATCATATTACTCTTGTACATAAAAGAGGTTCATTGTTTCCGTGTCcggtttgttttaaaaacttccCGGATAACACTAAATTAAAACGACACTTTGTTATACATACAGGCGAAAGGAAATaccaatgtaaaatttgttctaAAGCTTATAAACAAAGTGCTCATCTACAAAGTCATATGCTTTCACATACAGGagattttaaacataaatgtcCCGAATGCGATAAACCATTAGAAAACCAATTTAAGCTTAAAAAACATATGGAGAAGCGACATACGAAAAAAGAACATCGAGAATTAAAATGCGAAAtatgttttaaagtttatacTCATccgaaatggttaaaaaatcatATGTTTGTTCACAGTGTAGAACCTACCAAGTACTCTTGTCCTAtatgttttaaagaatttaacgAAAAGTATGGATTAAATAGACATTTAGTTATACATACAGgtgaaaaaaagtataaatgtgAACATTGCGATAAAGCATATTCTCAAAATGGTCATTTACAAATACACATGGCAGTCCATACTGGTGAACGGAAACACAAATGTTCATTTTGTCCTAAAGCTTTTGCTAGTAGCGGGGATTTATTAAAACATACACGTATACATACAGGAGAACGTATATATAAATGTACATATTGTCCTAAAGATTTTACTAATAATTCAACCTATAGATATCACATTGCTATGCATACGGGGGAAAAAAAGTatcaatgtaaaatttgttttaaaagttttaccGGAAATCAATCATTGAGAGCACATAGATCCGTTCACACTGgagaaaaaagatttaaatgtaaatattgtGATAAAGGATTTACTAGAAGTTCTGCTTTAAAGTTACATAAGGAAAGTGAACATGAACATGATGAAGAAATCAAAGATAATATTTATCTACAAGATTTAAAAGATTTGCAAAGTACTAGTGAAACTTCAGTCGATACTAATGAAAGTTCTAATGTTACTGATGATGATACTATACAATTAATTgttccttaa
- Protein Sequence
- MSETKPVAYIKQEIASNSEEMEHFEPEDFGLDDIIPVKTEKIKEEPEDDDSDCDSDFVPDVPDILKLSFDEDTIKTESLDDESRKHQCNICSKRFPYLSALRQHLVTHKKYKCSFCGEDFGKKGALSYHLKRDHNIEKSFACGVCQKSFSSKYKLKRHCLSHTDEKNYLCSICSKAFRQSGHLQSHMLVHTEERKYECLQCSKAFKEQSKLKKHVQTHLDNPTKEKLNLKFECSICNKMYSQKHHLQNHITLVHKRGSLFPCPVCFKNFPDNTKLKRHFVIHTGERKYQCKICSKAYKQSAHLQSHMLSHTGDFKHKCPECDKPLENQFKLKKHMEKRHTKKEHRELKCEICFKVYTHPKWLKNHMFVHSVEPTKYSCPICFKEFNEKYGLNRHLVIHTGEKKYKCEHCDKAYSQNGHLQIHMAVHTGERKHKCSFCPKAFASSGDLLKHTRIHTGERIYKCTYCPKDFTNNSTYRYHIAMHTGEKKYQCKICFKSFTGNQSLRAHRSVHTGEKRFKCKYCDKGFTRSSALKLHKESEHEHDEEIKDNIYLQDLKDLQSTSETSVDTNESSNVTDDDTIQLIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -