Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: -
Assembly: GCA_963243735.1
Location: OY725336.1:499453-502398[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.5e-14 1.4e-11 45.7 2.1 1 44 7 50 7 50 0.97

2 11 3.6e-16 3.4e-13 50.9 0.2 1 44 108 151 108 151 0.99

3 11 2.5e-10 2.3e-07 32.2 1.4 1 44 236 279 236 279 0.97

4 11 7.3e-16 6.8e-13 49.9 2.1 1 44 330 373 330 373 0.98

5 11 0.55 5.1e+02 2.3 0.0 16 26 518 528 510 534 0.87

6 11 0.0042 3.9 9.1 1.1 12 36 555 580 548 582 0.79

7 11 5.2 4.8e+03 -0.8 2.7 14 28 587 601 573 617 0.71

8 11 0.039 36 6.0 4.3 16 38 617 640 607 641 0.77

9 11 0.0033 3.1 9.4 0.2 18 43 654 681 645 682 0.71

10 11 0.32 2.9e+02 3.1 5.2 18 41 682 702 676 703 0.89

11 11 0.27 2.5e+02 3.3 1.0 19 40 711 729 709 731 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.5e-14	1.4e-11	45.7	2.1	1	44	7	50	7	50	0.97
2	11	3.6e-16	3.4e-13	50.9	0.2	1	44	108	151	108	151	0.99
3	11	2.5e-10	2.3e-07	32.2	1.4	1	44	236	279	236	279	0.97
4	11	7.3e-16	6.8e-13	49.9	2.1	1	44	330	373	330	373	0.98
5	11	0.55	5.1e+02	2.3	0.0	16	26	518	528	510	534	0.87
6	11	0.0042	3.9	9.1	1.1	12	36	555	580	548	582	0.79
7	11	5.2	4.8e+03	-0.8	2.7	14	28	587	601	573	617	0.71
8	11	0.039	36	6.0	4.3	16	38	617	640	607	641	0.77
9	11	0.0033	3.1	9.4	0.2	18	43	654	681	645	682	0.71
10	11	0.32	2.9e+02	3.1	5.2	18	41	682	702	676	703	0.89
11	11	0.27	2.5e+02	3.3	1.0	19	40	711	729	709	731	0.79

Sequence Information

Coding Sequence: atgtcttcCCCAAGGAGATCGGCAATATGGAATGTGTTTACAGAAACGCACAAAACAGACTATATAGCTACATGTAATATTTGTTCTCAAGAGTTCTCTTATAGATCTACAACTACAAACTTAATGAAACATCTAAAAAGAAAGCATCCGGAAGTTAGTTTGAATTCAACTTATTCTCAAGATACTCATAAACAAGTCGAAATAGTAATAGAAAGGCAAATTGAAAACGAATGTGAGATAgaatcatttaaagttgaagTAAAGCCTGCTGCAGTGGAAGACATTGGAGAATTTATTGTATTAGGTTGTGGAAAAAAAGTGTCACCAGTgtgggatttttttgcaaaaataccAAACTCCGACTATATGGCCTCAtgtaattattgcaaaaaaggGTTATCTTACAAAACTACAACGTTCAATTTAAAGAAGCACATTCAAAGAAGACATCCACAACTTTTAAATgaaTCATCCCAGTTTCAAACTGTTCCTGAAGATCAAGTATTACCTAGTTTTTTAACAACAGAAGaccttgaaaatattgaaaacgtTCCAAATTCTCCTATAAACAACTCGGATGAGTTGGAAGATAAAGATTTTTGGGATATACAAAATTCAGATGATGATCCAGAGTTTAGGCCAACCCCAGAACCATTTGAAGATGAGTTTGAGTCCAACAAAGCTCCTAATATTGGCAAAAAAAGGTCTCAAATTTGGAACGTTTTTACAgAAAAGCCAAACAGTGATTACGTTGCCTTATGCAATGTCTGCAAACAAGAATTTTGTTATAGAAGCACTacgaataatttaaagaaacatTTTCAACGCAAACACCCTGATTTAAATATGAAAGATAAAATAGATCTGGTTAAACCAGAATCAGATCAACATGAAGAAAAATGTCGGATTATTGTGAAAAATGATTCGTCCGATGATGAGAGAGTCAATGGAGATGACGAAgagGAAAAGAACAGCAAACGAAAACCttctcaaatttggaaatattttactaaaaagaaCTCCAAGGAATATATAGcaatttgtaatatttgtaaGAAAGAATTAGGGTACAGATCGACtacatcaaatttaaaaaaacatttagacAGAAAACATCCTCATATAGAATTAATTAAGACAGAAGTCGAGGAACAAAAAAGGgcATCTCCTGAAGTTCCCATAAAAACATGTTTAAtatgtttacaaaataataatgatgaAACTAAAGATTTCATTCCAGTTGATAACTGTGACTCACAAGATAAATCTTACATGAATAAAATCCAAGAAGTGGCTAATCAACCAGTGGTTATAGATGATTCTCATGTGTTATGTCAAACTTGTATCAATGATTTGGAACAGGTTATCCAATTTAAAGATAAACTAATGAACGCTTTtgaattttggagaaaaattgaACCCGAACCTGAATCAAAATCAGATCCAGACTCTAAGCAAAAAGTGGATCTAGAATCATTAGATATGTCAGCAGCAGATGAtgATATGAATCATTCAGATTACTCAGATTTGGAGGACGGGGAAAGCTTGGCAAAATTCACTTGCTCAAAGTGCCACAAAATCTTCCCATCGCCTTCGATCATGCTAAAACACAATTGTGATAAGGTACACAATGAAAAAAGTATCCAATCGAAAGTGAAAATTATTagagataataaattttactgcgAACATTGCGGGAGaggtttttcaataaaatggaAATTGACGAAACACTTAAAAAAatgTCAAAATAATGCTTTGAAGCAATTTACCTGTAGTTTATGCAACAGGGTATTTAAGAAAGCTTATCATTTGCGTGAACACATGGCATCTCATACTGGAGAACGTAATTATAGTTGTAATCTTTGTGGAAAAACATTTCAAAGGTCATCTTCTAAGCATAAACATATGAGAAGTCACAATGCAAAGCCTggagaaaaatccaaaaagacACCATTTTTGTGTACCATATGCGGAAAGAGTTTTCCATATTCTAACGGAGCTTCGAGACATATGAGGGTACATTTGGGAGAAAGAAGGCACGAATGTCACATTTGTTTAAAGAAGTTCAGTCAAACTACACATTTAAAGgtTCATTTAAGAACCCATTCAGGCGAAAGACCGTATGGTTGCATGATTTGTGGCAGGACATTTTCGTTAAACGCAAGTTTAAGAAAACATATGAGACTACATGTCGGTTCAGGGGAGTTTgttaaattagtgaaaaatttagaaacaaactTGGAGACTAATATGGAGGAAAATCTTGGAAATAATCTTAGTACAAGTCTAGCTGCGAATTTGGGAGTTATCGAAACCAATTTAGATGAGCAATTGGAAGATAATATGGATGTGGATTTGGAGACAAATATCGAACATGCTGATGTTGTCACTGAGGATGGTATCCACGTTTTGACTCATCATGAAATTCATATTGAAGGAAATCAATGTGTTGGGtag
Protein Sequence: MSSPRRSAIWNVFTETHKTDYIATCNICSQEFSYRSTTTNLMKHLKRKHPEVSLNSTYSQDTHKQVEIVIERQIENECEIESFKVEVKPAAVEDIGEFIVLGCGKKVSPVWDFFAKIPNSDYMASCNYCKKGLSYKTTTFNLKKHIQRRHPQLLNESSQFQTVPEDQVLPSFLTTEDLENIENVPNSPINNSDELEDKDFWDIQNSDDDPEFRPTPEPFEDEFESNKAPNIGKKRSQIWNVFTEKPNSDYVALCNVCKQEFCYRSTTNNLKKHFQRKHPDLNMKDKIDLVKPESDQHEEKCRIIVKNDSSDDERVNGDDEEEKNSKRKPSQIWKYFTKKNSKEYIAICNICKKELGYRSTTSNLKKHLDRKHPHIELIKTEVEEQKRASPEVPIKTCLICLQNNNDETKDFIPVDNCDSQDKSYMNKIQEVANQPVVIDDSHVLCQTCINDLEQVIQFKDKLMNAFEFWRKIEPEPESKSDPDSKQKVDLESLDMSAADDDMNHSDYSDLEDGESLAKFTCSKCHKIFPSPSIMLKHNCDKVHNEKSIQSKVKIIRDNKFYCEHCGRGFSIKWKLTKHLKKCQNNALKQFTCSLCNRVFKKAYHLREHMASHTGERNYSCNLCGKTFQRSSSKHKHMRSHNAKPGEKSKKTPFLCTICGKSFPYSNGASRHMRVHLGERRHECHICLKKFSQTTHLKVHLRTHSGERPYGCMICGRTFSLNASLRKHMRLHVGSGEFVKLVKNLETNLETNMEENLGNNLSTSLAANLGVIETNLDEQLEDNMDVDLETNIEHADVVTEDGIHVLTHHEIHIEGNQCVG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01047778;
90% Identity: iTF_01047778;
80% Identity: iTF_01047778;