Ntra031481.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- -
- Assembly
- GCA_963243735.1
- Location
- OY725347.1:24435586-24448977[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-06 0.0017 19.5 0.0 1 39 16 54 16 59 0.93 2 2 1.7 4.3e+02 2.2 0.0 7 18 145 155 137 156 0.82
Sequence Information
- Coding Sequence
- ATGGTTAGACACTATGTACGTAAAACAACTAAGAGAAGTACATATACTGATGAGACTCTAAAAAGGGCATTAGACGAAATTTCAAGAGGTGTAATAACACAGTATGCGGCCCACAAGAAGTATAACATTCCACAAATGACTCTCAGTTACCACAGAAGAGGGCTGAGGGGTGTCAAAAGTTCAACTATGGGAAGAGGAACAGCAATTTCTTATGATGAAGAAGCGAAACTTGCAGAGTGCTTAATaacaatggaaaaatggggGTGGGGATTAACGAGgcgtgatatttttaatattgttgagaaggcgagaggtaaaaaaggatCTCGCAAAAAAGTTTACCAAAATATTGAACCAGAAGAAAACGAACAAGAGGAAGAAATGATACTTGATGATAGTGACGATGACATAGAAGAAGAGATGCGAGAAGTAGAAGCACTAGAAGCTTGTATGAATGAAATTAGTAAGCCTTTGAACGAAGTAACAGAAAATGATTGGGTGTTAGTATGCCTCTCAGGGAAAAAGTCCAAAAGGTACTATGTTGGCCAGATCATGCGTGCTGCTAATAACGAATATGATGATGTCGAAATAAAGTTTACCAAAAAAGTTCCTACTTTAGATCCTATGTCTTCATCAACTTTTATTTGGAAATGCCCTGAAGAATGTGCTTGTATTGCAAGAGAGGACATCATTCTTTCACTTCCAACACCACACTTTGGTCGACGCGGTTTAATACAATTTGAAATagactttttttcatataacGATGAGTTAAGGGAAGAAATTGACTACGACATTACAATTCAATCGCCCCTTTCACAGACAGTAACTGACGCAACAGATACTCCACAATCCACAGACACACCAGATGCTTCAGAATCAGTGATCCAATGGGCTACTCCACGAACCAGCTCGGCAGCATCGAATTGA
- Protein Sequence
- MVRHYVRKTTKRSTYTDETLKRALDEISRGVITQYAAHKKYNIPQMTLSYHRRGLRGVKSSTMGRGTAISYDEEAKLAECLITMEKWGWGLTRRDIFNIVEKARGKKGSRKKVYQNIEPEENEQEEEMILDDSDDDIEEEMREVEALEACMNEISKPLNEVTENDWVLVCLSGKKSKRYYVGQIMRAANNEYDDVEIKFTKKVPTLDPMSSSTFIWKCPEECACIAREDIILSLPTPHFGRRGLIQFEIDFFSYNDELREEIDYDITIQSPLSQTVTDATDTPQSTDTPDASESVIQWATPRTSSAASN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -