Ntra011161.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- -
- Assembly
- GCA_963243735.1
- Location
- OY725338.1:38177920-38178231[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-07 6.2e-05 24.1 0.0 12 40 29 58 19 61 0.85 2 2 3.9 9.7e+02 1.1 0.0 23 31 83 91 82 91 0.88
Sequence Information
- Coding Sequence
- ATGCCGAAAACACATAAACACAAGTTAGGCACTGCGGTTTGGCGCAATTATGACCCACAAAAAATGGAGTATGTGTTAAGAGGTATTCTGGATGAACATTTGTCATTCCAGCAAGCCGCTGAGAGATTTGGTATACTACGTTCTACTTTACATTCCAAATATCTAGGTAGACATAGTGATATGCTTGGTAAACTGCCTGCAATTCAATTTGCAGAGGAAAAATTATTGGCGAAAGCAATGTTAACTGCGATTGAATTTGGTGTTCCATTCACAGAAAGGTGTCCTGAAAGATTTTGTGGAACAGTATATTAA
- Protein Sequence
- MPKTHKHKLGTAVWRNYDPQKMEYVLRGILDEHLSFQQAAERFGILRSTLHSKYLGRHSDMLGKLPAIQFAEEKLLAKAMLTAIEFGVPFTERCPERFCGTVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01047149;
- 90% Identity
- -
- 80% Identity
- -