Ntra014960.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- -
- Assembly
- GCA_963243735.1
- Location
- OY725340.1:24567019-24567345[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-08 4.7e-06 27.7 0.1 5 41 1 37 1 39 0.91
Sequence Information
- Coding Sequence
- ATGGCCAAAACCATTGAAGCTCTTAGAGCGAAAAAAATTGGTCTGAAAAAAGCAAGTAAAACATTTAATGTGCCCAGATCGACTCTTCAAAGACTGGCAAAGGCAAAATACGGCAGCCCTGTGGAAGCTTCGCGCACAAATATTGGAAGCCCCACGGTTTTAAATGAAACGCTGGAAAATGAGTTGGTTGAATATTGTCTTGCTATGGAGGCATCGTTTTTTGGACTAACACGTACAGACCTGCGAAGAATGGCTTTACAGCTGGCCGTAAGAAACAATCTCAAGCATCCTTTTGGTGACGATATGGCTGGAAAAGCTGTTTCTTAA
- Protein Sequence
- MAKTIEALRAKKIGLKKASKTFNVPRSTLQRLAKAKYGSPVEASRTNIGSPTVLNETLENELVEYCLAMEASFFGLTRTDLRRMALQLAVRNNLKHPFGDDMAGKAVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248868;
- 90% Identity
- -
- 80% Identity
- -