Ntra029128.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- -
- Assembly
- GCA_963243735.1
- Location
- OY725346.1:17116994-17117801[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-08 1.5e-05 26.1 0.1 3 34 17 47 15 49 0.94 2 2 8 2e+03 0.1 0.0 21 32 80 91 69 95 0.78
Sequence Information
- Coding Sequence
- ATGCCGAAAGTTAggactagaaaaataaaaaaagtcaaatggACAGCTGAAATGCTTGCTAGAGCTATAGCATTAATTGATGAAGGCTACTCCATTCATGCTGCAGCGAAAAGGTTCGAAATTCCTTATTCAACATTGCAAGGAGGGAACCCAAACATTACTCCATATGAAGTTGCCTCTCTTTTCCAAAAAGCTTATGCCACTGTCGGTTCAATAAGCAAGGGAGAATCTGGATTCAAGGCAGCCGGAATTTATCCCTTAAATCGTAATGTTTTCACTGAAGAAGATTTTATGACATCTGAACTTCTAACTGAAACATACATTGATTCATCGATTTCTCTAAGGGAACCTGGCCCTACAATTTCTCAGCATAAACTTGACCTATCGGCTACTGGCATGGGCTCTAGTTCTTGCACTTCTCAAGTGGAACCTGGTTCGTCAAGTTCTCATACTCCTAAAGCAAAGGGGAATAATTTAAGTTTTCAATGTCTCCTACCAGttccaattaaaaaatccaCCGAGAAATCTACGAGGAAGGAAGAGAACAGAATTCTACCATTCTAA
- Protein Sequence
- MPKVRTRKIKKVKWTAEMLARAIALIDEGYSIHAAAKRFEIPYSTLQGGNPNITPYEVASLFQKAYATVGSISKGESGFKAAGIYPLNRNVFTEEDFMTSELLTETYIDSSISLREPGPTISQHKLDLSATGMGSSSCTSQVEPGSSSSHTPKAKGNNLSFQCLLPVPIKKSTEKSTRKEENRILPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -