Ntra010252.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- -
- Assembly
- GCA_963243735.1
- Location
- OY725338.1:26026261-26026818[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-09 3.2e-07 31.4 0.0 6 40 23 57 18 60 0.89 2 2 5.3 1.3e+03 0.7 0.0 30 45 124 139 124 139 0.87
Sequence Information
- Coding Sequence
- ATGCCACGAAAATATAAGCGGCAACTGGGTAGTCGCAGATATAAAGACTACAAAGAAAATTCAGTAGAGGAAGCCCTAAGAAAAGTATTAGATGAAGGTTGGAGCCTTAGAAAGGCAGCAAAATATTACAAGGTGCCCTATGGAACCTTAAATAATAGATACCATGGTAAACATGTCCGCCAAGTTGGAAGCCAAACAATATTTAgcgaaaatgaagaaaaagtaataatttctGCAGCAAGCATTTGTGAAGAGTGGGGGTTCCCGTTGTCTACAAGTGATTTAAGATACTTAGCAAAAAGCGTTCACGATGCACAGGGCCGTACTATACGAccgtttaaaaataatcttcctGGGCCGGATTGGGTATATTCTGTTCTCAAACGCCATAAAAAAGCGAGAGCAGATGTTTCGAGAGACACATTAAAGGCATATTTTGATAATCTCACAGACACTCTTAAAGACTTACAATCAACCAACAAATTTAATTACGATGAGACTAATTTGCAGGATGATCCAggcaaaaagaaaacaaattactttagaaaagaggggtaa
- Protein Sequence
- MPRKYKRQLGSRRYKDYKENSVEEALRKVLDEGWSLRKAAKYYKVPYGTLNNRYHGKHVRQVGSQTIFSENEEKVIISAASICEEWGFPLSTSDLRYLAKSVHDAQGRTIRPFKNNLPGPDWVYSVLKRHKKARADVSRDTLKAYFDNLTDTLKDLQSTNKFNYDETNLQDDPGKKKTNYFRKEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105566;
- 90% Identity
- -
- 80% Identity
- -