Ntra014978.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- -
- Assembly
- GCA_963243735.1
- Location
- OY725340.1:24734973-24735365[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-10 9.5e-08 33.1 0.0 5 40 1 37 1 41 0.91 2 2 8.8 2.2e+03 -0.0 0.0 23 30 62 69 61 74 0.87
Sequence Information
- Coding Sequence
- ATGGAGGATGCGTTGAGAGGTATTCTGGATGAACATTTGTCATTTCAGCAAGCCTCTGAGAGATTTGGTGTACCACGTTCTACTTTACATTCTAAATATCTAGGTAGACATAGTGATAAGCTTGGTAAACGGCCTGCAATTCCATTTGCAGAGGAAGAATTAATTGCGAAAGCAATGTTAACTGCGGCTAAATTTGGTGTTCCATTCAGAGAAAGTGTTCTGAAAGATTTTGTCGAACAGTATATTAATAGAAAAGGGGTTGTTGTAAAGCAATTTCGCGATAAAGACCAGGCAGCGActgttatcattattttctGTTACGAAATCCTGAATTATCGAAAAGAAATtcacaaaacatcaaaagatGCAGAGCTGAATTGCCACCAACTGTGA
- Protein Sequence
- MEDALRGILDEHLSFQQASERFGVPRSTLHSKYLGRHSDKLGKRPAIPFAEEELIAKAMLTAAKFGVPFRESVLKDFVEQYINRKGVVVKQFRDKDQAATVIIIFCYEILNYRKEIHKTSKDAELNCHQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -