Ntra044975.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- retn_1
- Assembly
- GCA_963243735.1
- Location
- OY725355.1:8715828-8750376[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-20 1.5e-16 62.0 0.0 13 89 233 306 221 306 0.91 2 2 2 1.8e+04 -2.3 0.0 25 38 444 457 404 460 0.71
Sequence Information
- Coding Sequence
- ATGACAATTACAATAAAGGAGATAAGTGCATTTATTGAATTGATTCCATTTCGAGGAGGACTTGGATTCCGTCAGTACATCCCCAATAAACGTCATATATATGGTCTGAAACTATACTGTGCTGCTGGTGGCTATACTTATACACTAAAATTATATGGGGGAAAATCAAGTAGACCAGGGGCTACCAGTATTGCAACAGATGTAGTAATGGTACCTTTACTAAATAGTGGCAGAACGCTGTTAAAGAGAGGAGAAATGACTGCATTGCAGAGCAATACAAATGTAATTGTAGGCAAATGGAGGGATAAAAGAAATGTTTTGTTCCTGACCACTAAAGATGTTCCAGAAATAGAAGATGTAGATACGAGAAGAGGCATTGCGAAAAAACCTTCCACTATACTGgaatataataaaactaaatctTTCACTGATGTCTCGGACCAGAAAGCAGCATATGCATCCACAATTCGAACAGCTATCGCTGGACATTCTAGTTCATTCGCTGCACAGTCTTTAGCTGTATCTCCAACTTCGCGTCCAACCACTGCTCCTTCTTCAGCTATAGTTGCATCTGCTCCTCAATCTACTactgcatttttatcatttgaCACATCGTCTTCAGCATTAGTAGATCATTGTTTTCAGGAATCATGGGAATGTCAGATACCTCTGCAGCACCAAAATCTACGTCAGAGAACACGTTCGGGAACCCCAATTAATAGACTACCGATAATGGCAAAATCTGTTCTTGATCTCTATGAATTGTACAATTTGGTGATAGCACGTGGTGGATTAGTAGACGttattaataagaaattatGGCAAGAAATCATAAAAGGACTTCACTTACCTTCATCCATTACATCAGCGGCATTTACACTTAGGACACAatataTGAAATATCTGTATCCTTACGAATGTGAAAAAAGACGACTGAGCACACCAGCAGAACTTCAAGCAGCTATCGATGGCAACCGCAGGGAAGGCAGGAGAAGCAGTTACGGTCAGTACGAATCGATGCAAAGATCACCCAATCCTAGTCTTCAGATGTCACCCTTATCTCTCGTATCTCAGCAACAACACCAGCAACTTGCAGCGAGAATGATGGGTGGAGGAATTAACTTACACAATGGAGCACATCATCCTAGTCATCCACAACCTATGGGTCAGCCTATTAATGGGGGACCTCTACCAGGTTTAGCACCTAGTGAATTTGAAGCCCGCATGATGGAGTACGTTAAACTTTTGAACAAAGAGATTCGAAGTTCAGCGGCAACGCCTCCTCGTCAGGGCGATATTTCACCTCCGAATACCACCTCCCCACTAAATCAACTCGAAATGTCTCGTATGAACCTTTGGAATCTATGGAATAACAATCAACCCGCCGTGGAACCACAAAAGGAACCCATAAATTTATCAGAACCATCGTCGGGAGTGATGAAAAGGGAACCTGAATCTAGGGAGTCACCTCCGCCATCCAAGAGGATTACTAAAGAGGAAGATGAACCCGCGCATAAATCCTTATCACCTTCGACGCATATTAAAATCAACAGTAGAGgagaTTCCCGAAACGGTGATAACTCCCTAGTGGTTAGTATGGAGCTAAACGGGGTGACATATCAAGGGGTCCTGTTCGCCCAAAATTCCCCCAACGGTAATCGGACGGCACTGGCTTCCTAA
- Protein Sequence
- MTITIKEISAFIELIPFRGGLGFRQYIPNKRHIYGLKLYCAAGGYTYTLKLYGGKSSRPGATSIATDVVMVPLLNSGRTLLKRGEMTALQSNTNVIVGKWRDKRNVLFLTTKDVPEIEDVDTRRGIAKKPSTILEYNKTKSFTDVSDQKAAYASTIRTAIAGHSSSFAAQSLAVSPTSRPTTAPSSAIVASAPQSTTAFLSFDTSSSALVDHCFQESWECQIPLQHQNLRQRTRSGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGQYESMQRSPNPSLQMSPLSLVSQQQHQQLAARMMGGGINLHNGAHHPSHPQPMGQPINGGPLPGLAPSEFEARMMEYVKLLNKEIRSSAATPPRQGDISPPNTTSPLNQLEMSRMNLWNLWNNNQPAVEPQKEPINLSEPSSGVMKREPESRESPPPSKRITKEEDEPAHKSLSPSTHIKINSRGDSRNGDNSLVVSMELNGVTYQGVLFAQNSPNGNRTALAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -