Ntri005244.1
Basic Information
- Insect
- Neocloeon triangulifer
- Gene Symbol
- -
- Assembly
- GCA_031216515.1
- Location
- JASKYO010000008.1:2184675-2186879[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.018 1 9.8 3.3 3 23 245 266 244 266 0.95 2 13 0.0032 0.19 12.1 1.9 1 23 272 295 272 295 0.95 3 13 0.00033 0.019 15.3 0.2 2 23 302 323 302 323 0.98 4 13 0.096 5.7 7.5 3.8 1 23 331 354 331 354 0.95 5 13 1.6e-05 0.00093 19.4 1.6 1 23 361 383 361 383 0.97 6 13 0.0092 0.55 10.7 1.7 2 23 401 423 400 423 0.95 7 13 0.017 1 9.9 1.2 2 23 430 452 429 452 0.94 8 13 0.0047 0.28 11.6 0.2 1 23 458 480 458 480 0.95 9 13 4.5e-05 0.0027 18.0 0.2 1 23 489 512 489 512 0.95 10 13 1.5e-05 0.00091 19.4 4.6 1 23 517 539 517 539 0.98 11 13 0.36 21 5.7 2.1 1 23 545 568 545 568 0.94 12 13 0.17 9.8 6.7 0.1 1 23 570 593 570 593 0.95 13 13 0.00049 0.029 14.7 1.2 1 23 612 634 612 634 0.98
Sequence Information
- Coding Sequence
- ATGACAGAAGGATTTGAAGATAATGGCATAGGAATGGTAAAGGTCACCCCAATGATGAAGAGGTTCCACTTTTCAAACCCTTTGTGTCTGGTCAACCTGAATCTCCTGTCAGAAGCCCTGTGGTGCAATGTCTGCGACGTTCCACTTTCGCTGAGATGCTGCGTTCAGGAAAGGATGTGGAGGAACACACACTTCCTAAAGGTCAAGTGCCACCTTTGTGTATTTGAAAGAAGCGTCCTTCTCTGCAATGATGATCCTGACGACGAGACATATCATGATCCTGAGCGATTGTCCTGTGATTACGGAGCAGAAACCTTGGCAGAAACTTTAGAGAATGGTGTAGAGGAACCTGACATTTGTGAGAATTATGCACTTGAAGATTGCAACGACCTTTGCTCACAAAAAAGTGCCAAGTCAGCATGCACGCCTTATGCTCGAAGAAAAAGGGGTCGACCTCCTGTAGTCAAAAGAAAAGTCCCTGGATCGTCAGACCCACTGGAAGCACCAAGAAGGTCCACCAGAGGAAGGTTGCTTCCTAGAAAAGTGAATGAATCCAAAAAAAGAGTTTCTCCAGCTCCTTCATCAATTGAAGATGTCAAAAAAGTTGAAGAAGAGGAAATACAgTTTGATTGGGCAGACCAAGAAGAATTTGATTATGACCAAGGTCCTTTAAATCGAtctgaagaagaaaatgagcctgaagaaaattacaaaaaGGTACAAACGCCTTGTTGCTCCTACTGTCAGCGCCAGTTCCGATGGAAGAAGCAACTCGTCAACCACATGAAAGCTGAGCACCCTGAGGTGCGCGCCTTTTTTTGCGAGCTGTGCTCCGAGGAATTCACCACAATCTACTTCCTACGAAAGCACAAACGGGAGAGTCACCTGCCCAAGAATTCACCAAAGTGCGAGACCTGTGGCCAAGCCTTTCCCACGCTGGATGTGTTGGAAGCACACAAAAAGCGGCACCTGCCGAAGGACGCCAGACAATTCAAGTGCAGCCGCTGCTCCAAGAAGTTCTTCGAAGCAAAAAGGCTGAACGTCCACTTCCTAAGGTTCCACAAAAAGGTTGAGGGGGAGTTCAAGTGTGCCCATTGCCCACGCAGCTATGAGACAAAACGCCAACTTCTCAGGCACATCATCGAGCATGTTCAGGATGATATCTACGCCATCAAGCATAAggATGAGTTTGCTCGCTGGAAGTGTGAGTACTGTGAAAAGATTTTCAAGAACATGGGTCGGCAGTTGGTGCACATGCGGGAGTGCCACCCGGAGTTCAAGGCCCTCATCTGTGGCTGGTGCGGCGAACAGTGCACCACGGGCAAGGCCTTTCAAAAGCATCGTCGTCTCAATCACCGTCCAGACTCACTCTATGTTTGTGACGAGTGCGGCCGAGCCTTCTTGAACCCCCGCAGGTTGAAGCTGCACAAGGTTTCCCATCGGACCGATAACGAGGGAAAAGAGTTTTTGTGCTCGTACTGCCCCCGAGCTTTTGCCGAGAATAGTTCCTTGGCTGACCACATAAAAAGGTTCCACGTCATCACCACCTACTACTGCGAGCACTGCCCGAAAACTTTCAAGATGAAGTTCAACATCCGAAGACACATGCAGCTGCACACAGGAGAGTTTCGACACTCTTGTCCCTTCTGCGGTGCCAATTTTGTCGCTGCTGATGGCAGGGACCATCACATTCGCAACTGCCATCGTTTCATGTGCGTGGTGTGTTCCTCAATTTTCCCCACAAAGGACGAAGTTGTGATGCACCGAATCAGAGAACACCCAAGTGTCGATAGGGCTCGCGAGGGTGATACAATTTTTGAGAAGATTACGGACTACAATTGTGAAGTTTGCTTCCGTTACCTATCTTCGAAACAAGCACTAAACACTCATTTGAGGACTCACACCAAGAGAAAGAGGAAAGAAGAAGACTCGGCTGCAGaaactcaaaaataa
- Protein Sequence
- MTEGFEDNGIGMVKVTPMMKRFHFSNPLCLVNLNLLSEALWCNVCDVPLSLRCCVQERMWRNTHFLKVKCHLCVFERSVLLCNDDPDDETYHDPERLSCDYGAETLAETLENGVEEPDICENYALEDCNDLCSQKSAKSACTPYARRKRGRPPVVKRKVPGSSDPLEAPRRSTRGRLLPRKVNESKKRVSPAPSSIEDVKKVEEEEIQFDWADQEEFDYDQGPLNRSEEENEPEENYKKVQTPCCSYCQRQFRWKKQLVNHMKAEHPEVRAFFCELCSEEFTTIYFLRKHKRESHLPKNSPKCETCGQAFPTLDVLEAHKKRHLPKDARQFKCSRCSKKFFEAKRLNVHFLRFHKKVEGEFKCAHCPRSYETKRQLLRHIIEHVQDDIYAIKHKDEFARWKCEYCEKIFKNMGRQLVHMRECHPEFKALICGWCGEQCTTGKAFQKHRRLNHRPDSLYVCDECGRAFLNPRRLKLHKVSHRTDNEGKEFLCSYCPRAFAENSSLADHIKRFHVITTYYCEHCPKTFKMKFNIRRHMQLHTGEFRHSCPFCGANFVAADGRDHHIRNCHRFMCVVCSSIFPTKDEVVMHRIREHPSVDRAREGDTIFEKITDYNCEVCFRYLSSKQALNTHLRTHTKRKRKEEDSAAETQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -