Ntri008829.1
Basic Information
- Insect
- Neocloeon triangulifer
- Gene Symbol
- -
- Assembly
- GCA_031216515.1
- Location
- JASKYO010000012.1:2818581-2821750[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0068 0.4 11.1 0.1 1 23 312 335 312 335 0.91 2 15 0.0018 0.11 12.9 2.4 2 23 338 359 338 359 0.97 3 15 0.002 0.12 12.8 3.8 2 23 371 393 370 393 0.96 4 15 1.8 1.1e+02 3.5 2.7 2 23 440 462 439 462 0.94 5 15 0.0021 0.13 12.7 0.2 1 20 465 484 465 488 0.93 6 15 0.0015 0.086 13.2 0.1 3 23 495 516 494 516 0.94 7 15 0.00029 0.017 15.4 2.6 1 23 522 544 522 544 0.97 8 15 0.00024 0.014 15.7 1.8 1 23 550 572 550 572 0.97 9 15 0.0021 0.12 12.7 6.8 2 23 580 601 579 602 0.94 10 15 1.6 95 3.6 1.9 1 19 608 626 608 631 0.85 11 15 6.6 3.9e+02 1.7 0.3 2 12 645 655 645 667 0.77 12 15 0.0012 0.073 13.4 0.1 1 23 695 718 695 718 0.93 13 15 1.1 63 4.2 1.8 1 23 723 747 723 748 0.91 14 15 0.00057 0.034 14.5 0.2 1 23 753 776 753 776 0.95 15 15 4.2e-06 0.00025 21.2 3.0 2 23 785 806 784 806 0.96
Sequence Information
- Coding Sequence
- ATGACGGCTGCGCCTGCTGCAGGAAGTGCAGCAACCTTGACGTTGCGTGAAATCGCATCCGAGGAAAAGTACCACAGCAAGTTGTCAAAGATGAAAATCATCACAAACGACACCAGCGAGTACAAGTTTTTCGCTTTGGTCGATGACACCAGCTACATCATGTGGGCCTGTGCGTCGTCCGCGGACTGCCGCTGCATGGTGGCCACGGACTTTGACGGTGTCCTTGTCAACACCATCAACTGTCACGCGGCCTTCTGTCCTGCCTCCGTGACCCAACGTAAGAAACGCAAGGAGGAACCAGCAGCCACCATCAAAGAGTTCAACGGCGTCAAATTGCGAGAGGTTTTGGTGCCTTTCAAGAGTCTCGACCGCGAGGAAATTGCCACTGGGGTGTTGAAACCCACGTCAAAGTACCGCCTCATGCTTCCAATCAACAACAAGCTCACCCTTCCAGACTCAATTCccaaaGCTTATTCGAAGAAGTCGATCCAGAAAGCAACTTCTAAAAAAAGCTCCAATCCAACTCTCAGTCAGCACTGCCGAATGTGTGGTGAAGTCTCCGAAAAAATGACCCTGATCCTTGGTTTTGACGGCACTCACCGGGACCTTAAATTCAAACTCGAATGGCTTCTCTCAAAAAATATTGCCGATGATGACAAGCTACCTATGAAGTTGTGTGCATCATGCATTGTTAACCTGAATCTCGCCTACGACACCTTCATTATGGCAATGCGGACTCAGGAAAGACTCCGTGAAATGGCTGATAAGCAAGGAATCAAATTCCAAGTTAAAAAAGAGGATCCGCACAAAAAGATCTTCAACATGCTTTACAAggaggagagagaaaaggtgCCCCTTGGATCCACTTGCTGGCTTTGCAAGGAGGATAACATCGTTGATTTGCGGAAGCACAACGTAGTTTTCCACAGCGAGTTCCTCTGCCGCATCTGCAACGACGCCTTTGCCAACAAAGATGACCTGGCAGAACACATGGAAGCCAGACATCTCAGGTCCTGCGAGTATTGCTCATGCTCATTTGAGACGCAGAAGGGCTACGAATTGCACTTAAGGTCACACGAAATTTGCAAGACACCCGGCATGAAGTTTGTGCCGTGCCAGTTCTGCAAAGAGACTTTCCACAATAAGAAGGAGCTTCAAGAGCACCTCTGCACTGTGCATCTGCAGGAAATAGTTGAAAAGCAGGGTCCGAAGTACATGTCCATAAGCAAGCTAACAACGGTTAAAGAGAAGGAAGAACTGGAAAAAGAGTGTGAACAAGCCGGACTTAAAATTAGgcAAACAAACAACTATGATCTGGTTTGTCGGATCTGTGAAGAGAAGTCTCAGAGTCTGCTGCACTTAGTGAAGCACCACCGCGAGAAGCACAACAAGTACTTTTGTGACAAGTGCAAAGAGTCTTTCGACGAGAGATCGGCGCTCGAAGAACACATTCCGATGCTGCACGACCAGTACGCAGTGGCCTGCAACGAGTGTGACGAAGTTTTCCGCAGCGTTATCACCCTGGAGAATCACACGAAGGCCTTCCACTTGAACCAAAGCACCTTCACGTGCCCTGTCTGCAACAGGCTGTTCTTCTCTACGAGCAAACTCAAAGCGCACATGCATCTTCATTTAGCctcaaatgaCCACCAGTGCGCGTCGTGCGGCAAACTTTTCTCCAACAAGGCGTCGTATCTGAATCACCTGCGACTGCACGACGAGAGCCGCGAGCTGCTCCACTGTGCGCACTGCACCAAGACCTTCCAGAGCAAAAAGTACCTGATCGTGCACATCAAGTCGCACCACCTGTCAACGTGGTACTACAAATGCCTCGAGTGTGGCAAGGAGCACAGCACCCTGGACGACATCACGGTGCACTGCAACGAGTCTCATCCGAACGCTGAAATCAAGGTGCAGCGCCTTTCGCACGCCGTTTGCAACTTCTGCAACAGAGAGTTTGGCAGTGAGGTGGTGCGAGATCGTCATGTTTACAACAACCACAGGGTGAACAAAGGCAAAACTAAGAAGTTGAAGAGCGAAGATGGGGTgcccaaaattaaaaAGACGAGGGCTAAACGTCGCCACATTTGCCGTGAGTGCGACATGGTTTTCCCTACCAATGCTGACCTGGCCCTGCACAAGGAGAGTGTGCACAACTTGCAGAAGTTCTCTTGCGACATCTGCCCAAACAGACACTACACCTACGAAGGACTTCTTCGACAACATGAGGTCAAGGTCCATCACATCATACGCGAGTTCCAatGCCCATCGTGTGACGCAATGTTCAACACAAGCCGTAAGTTGGCGCAACATAAAGCTGTAGTTCACACCAAGCTTACAGCCAGTGATTTGGTGTGTCATTACTGTGACAAGCAGTTCACTACTAAACTGACTCTTCAAAAACATATGGGCACTCACACGGAAGACGTAGACCCGTCCATCCAATATGTGACGGTCTCGCATCAAGAGGGTGGCAGTGAAACGACAATTCGCATTGCACTAGAAGGACTCGATGCTCTGTGA
- Protein Sequence
- MTAAPAAGSAATLTLREIASEEKYHSKLSKMKIITNDTSEYKFFALVDDTSYIMWACASSADCRCMVATDFDGVLVNTINCHAAFCPASVTQRKKRKEEPAATIKEFNGVKLREVLVPFKSLDREEIATGVLKPTSKYRLMLPINNKLTLPDSIPKAYSKKSIQKATSKKSSNPTLSQHCRMCGEVSEKMTLILGFDGTHRDLKFKLEWLLSKNIADDDKLPMKLCASCIVNLNLAYDTFIMAMRTQERLREMADKQGIKFQVKKEDPHKKIFNMLYKEEREKVPLGSTCWLCKEDNIVDLRKHNVVFHSEFLCRICNDAFANKDDLAEHMEARHLRSCEYCSCSFETQKGYELHLRSHEICKTPGMKFVPCQFCKETFHNKKELQEHLCTVHLQEIVEKQGPKYMSISKLTTVKEKEELEKECEQAGLKIRQTNNYDLVCRICEEKSQSLLHLVKHHREKHNKYFCDKCKESFDERSALEEHIPMLHDQYAVACNECDEVFRSVITLENHTKAFHLNQSTFTCPVCNRLFFSTSKLKAHMHLHLASNDHQCASCGKLFSNKASYLNHLRLHDESRELLHCAHCTKTFQSKKYLIVHIKSHHLSTWYYKCLECGKEHSTLDDITVHCNESHPNAEIKVQRLSHAVCNFCNREFGSEVVRDRHVYNNHRVNKGKTKKLKSEDGVPKIKKTRAKRRHICRECDMVFPTNADLALHKESVHNLQKFSCDICPNRHYTYEGLLRQHEVKVHHIIREFQCPSCDAMFNTSRKLAQHKAVVHTKLTASDLVCHYCDKQFTTKLTLQKHMGTHTEDVDPSIQYVTVSHQEGGSETTIRIALEGLDAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01046573;
- 90% Identity
- iTF_01046573;
- 80% Identity
- -