Ntri003221.1
Basic Information
- Insect
- Neocloeon triangulifer
- Gene Symbol
- -
- Assembly
- GCA_031216515.1
- Location
- JASKYO010000004.1:95452-98927[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.94 56 4.4 2.6 1 19 334 352 334 357 0.81 2 15 0.033 1.9 9.0 0.2 2 23 361 383 360 383 0.93 3 15 0.012 0.74 10.3 0.5 2 23 386 408 385 408 0.96 4 15 2.2e-06 0.00013 22.1 0.3 3 23 416 436 415 436 0.97 5 15 0.0031 0.19 12.2 5.4 1 20 442 461 442 463 0.91 6 15 5.3e-05 0.0031 17.7 1.1 2 23 475 496 474 496 0.97 7 15 2.2e-05 0.0013 19.0 1.2 1 23 502 524 502 524 0.98 8 15 9.2 5.4e+02 1.3 5.7 1 23 530 553 530 553 0.95 9 15 0.13 7.9 7.0 0.3 1 23 559 582 559 582 0.91 10 15 0.00066 0.039 14.3 2.0 1 23 603 625 603 625 0.95 11 15 4.1e-06 0.00024 21.2 5.1 1 23 677 699 677 699 0.97 12 15 0.06 3.5 8.1 3.5 1 23 705 727 705 727 0.98 13 15 0.023 1.3 9.5 2.5 1 20 733 752 733 755 0.88 14 15 0.0008 0.047 14.0 0.4 3 23 761 781 759 781 0.98 15 15 0.088 5.2 7.6 1.5 1 23 794 817 794 817 0.91
Sequence Information
- Coding Sequence
- ATGCCAACTTGCGTTATTTTTGGCTGCAAAAACAGACCAGAAATGgtccaacaaaataaaaatcttgcaCTGACATTCCACagaTTCCCTATTATGAATCCGGAACTCATGAGTTTGTGGATGAAATCGATTGGAAGCGACAACCTGAAATCACCAAACAGTCCAATCCAAAAAAGCTCCATTGTTTGCTCTGACCATTTTGAGACGAAATGCTTCAAATTTGCGGGTATGAGGACCAGGCTCTTGGGAGATGCTGTACCAACCGTTTTCAAGAATTCTCCAAACCCTGCTGTGGCGTCTATGGGAGTCACAACCTCTGCTTTGACTGAATCAAACATTcatgaCTTGAAACTGAGAAGAAACATAAGGAGTGTCAAAATAGCAAACATTGAATCTGCTACAAAAAAGATTGTGGAAGTGCCTGGTTCTCCAcAAATCAATGTCCCAGCCAAGAAGATGCAACTAAACTCGTCAATTATTTCTATAACAGAAGGATGCTCAAATATCAGCAGAACTGGCCCATTTGATGTATCACCAATGGAGGAAATCACAAAACCAAGCCTTGTCTGTGTAGTTGGGTTAAATTCTGAGCCAAATTTGAGAGTTCTAGATCAATCCACCTATAcagacattaaaaaattagatggaTTATGTCGAGTTTGTCTGAAATCGACGCCGATAATGACGCCCATATTTGATGATGATGGCAACTCGGAATTGGTCAGCAAAATCCATAGACACCTTTCTATAAGGGTTTCCTATGATGATACTCTGCCCTTGAAACTTTGTAGCAACTGCGTTCAAGCATTAGAGGCAATTGAAAGACTAAGCCAACTCAGTTATGAAAATGAGTTGAAATTGAGGCTTTATATTGAGAGTAGCAAAGAGGCTGCGGGTGAAATGTCAAACGCTGCACAGCAAACAGAGTTGCCAATCGTAGCATTGAGAGAGgagACTCCGAAAGTAGTCGAGATTTCTACCAGGGAAGAAAAAAAGACTTTTGTTTGTTCGGATTGTGGAAAGAGCAGCTTGAATTTCAAGTCCTTTGCCAGGCACTGTTACTCAGTgcacaagaagaagaaatgcAAGTGGTGCGACACTTTGTTTGCCACCACTGAAGAGATGAATGCTCACAGAATTGAAGCTCACGGCTCGACTTGTGATTCATGTGGCATTAAATTCAAGGGAATCAACACAATGCTCAAACACATCAGGAAAGAGCATCCTGATTTTAAGGCCAACATGTGTGAAAAGTGTGGCAAGAGCTTCATCAGCAAGTACAGTCTGGCTGCACATTACGAGACCCACAACCTGACCACCCCCTATCTTTGTGATTCTTGCGGCAAAAGTTTCAAGAGCAAGCAGAAGCTGAGGCACCACAAATGTAATCCTGATGATGACGAGCAAGTTAGGAGCTGCAATAGCTGCCAGATTTGTGGCAACACTTACACTTTCCGTTCGTCACTTCAGAGGCACCTCATCCGACACACTGGAAACAAACGCTTTCAGTGTCACAAATGCGCCAAAAGTTTCTATGGCGCCGTCAACCTGCGGAACCACATGGTGGTGCATGAAAAGACCACTGTTTACGAGTGCCAGATGTGTTGTGCAAGGTACTATCACAAGAGAAACATGATCACACACTTGAAAGATAAACACTCTACACAGTGGCACTACAAGTGCCCATATTGTGTGCACTTATTTGCCTCAATAGATGAGGTGGTCAAGCATAGAGATGAAATGCACGACTGCCACGAGAGTCCCGAAATTGGCCTGCAACAAAAGGGCCCGACTCCTTTTGAGGAATTCAGaTGCAAAATCTGTGACAGGCAATTTGAGAACATTTATGCTTTGACACATCACTTCGAGGAGCACGTCATACACGGCCCTGAGGATCTAAACATAAAAACCATTGGTGTGGATGGCTTGCTGGAATGTGCTCTCTGTGGCGCAAACTTGACCTCGACCTGGGCCATGCGCTGCCACATCAAGAAGAGTCACCTGGGCGTCCATCAGAGGGAACTGCTGCACACTTGCGACCACTGCGAAAAACAATTCGCCACCAAGAGTCAGCTCAGGCGACACATCATGCAGCACACTGGAGAGAAGCCCTTCCACTGCGCCACCTGCAACGCCGAGTTCAGAAGCAGCACTGCTTGCAAAATCCACATGCGCATCCACACTGGAGAAACTCCCTACCACTGCCAGAAGTGTCCGAAAAAGTTCCGAAGCAGTGCCATTTTAAGAACTCACGAAGTCTTCCATTCGAAACCCTTTGGATGTGAACTTTGCCCTCAAAGattttctaGCAAGCTATTTTTGAAAGCGCACATAGATACGCATGGAAAGGAGGCAGGCGTTGGTCAAAAGTTGATCGTCTACAAATGCcagttttgcaatttcatcAGCAAAAGTCGTTCAATGGTCAAAAAGCACGAGGTTATCACCCACGCTGAATTGGATGAAGAGGCAGAAAGTTCCTTTGAGCAAATCACAGGTTCTGAAAGTGTACCCGTCGAGCAGCAGGAAGACGTCCATACTGAGTTCAGTTCTACAGTCCAAGCTACGTTTTTCACTCTGTGA
- Protein Sequence
- MPTCVIFGCKNRPEMVQQNKNLALTFHRFPIMNPELMSLWMKSIGSDNLKSPNSPIQKSSIVCSDHFETKCFKFAGMRTRLLGDAVPTVFKNSPNPAVASMGVTTSALTESNIHDLKLRRNIRSVKIANIESATKKIVEVPGSPQINVPAKKMQLNSSIISITEGCSNISRTGPFDVSPMEEITKPSLVCVVGLNSEPNLRVLDQSTYTDIKKLDGLCRVCLKSTPIMTPIFDDDGNSELVSKIHRHLSIRVSYDDTLPLKLCSNCVQALEAIERLSQLSYENELKLRLYIESSKEAAGEMSNAAQQTELPIVALREETPKVVEISTREEKKTFVCSDCGKSSLNFKSFARHCYSVHKKKKCKWCDTLFATTEEMNAHRIEAHGSTCDSCGIKFKGINTMLKHIRKEHPDFKANMCEKCGKSFISKYSLAAHYETHNLTTPYLCDSCGKSFKSKQKLRHHKCNPDDDEQVRSCNSCQICGNTYTFRSSLQRHLIRHTGNKRFQCHKCAKSFYGAVNLRNHMVVHEKTTVYECQMCCARYYHKRNMITHLKDKHSTQWHYKCPYCVHLFASIDEVVKHRDEMHDCHESPEIGLQQKGPTPFEEFRCKICDRQFENIYALTHHFEEHVIHGPEDLNIKTIGVDGLLECALCGANLTSTWAMRCHIKKSHLGVHQRELLHTCDHCEKQFATKSQLRRHIMQHTGEKPFHCATCNAEFRSSTACKIHMRIHTGETPYHCQKCPKKFRSSAILRTHEVFHSKPFGCELCPQRFSSKLFLKAHIDTHGKEAGVGQKLIVYKCQFCNFISKSRSMVKKHEVITHAELDEEAESSFEQITGSESVPVEQQEDVHTEFSSTVQATFFTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -