Basic Information

Insect: Neocloeon triangulifer
Gene Symbol: -
Assembly: GCA_031216515.1
Location: JASKYO010000002.1:4097861-4099459[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0019 0.11 12.9 0.1 2 23 202 223 202 223 0.95

2 11 0.021 1.3 9.6 0.4 1 22 226 247 226 250 0.86

3 11 0.022 1.3 9.5 0.2 2 23 260 282 259 282 0.96

4 11 0.00023 0.014 15.7 0.2 1 23 288 310 288 310 0.97

5 11 0.0026 0.15 12.4 1.8 1 23 316 339 316 339 0.96

6 11 0.046 2.7 8.5 0.1 1 23 345 368 345 368 0.93

7 11 1.5e-05 0.0009 19.4 0.7 1 23 377 399 377 399 0.99

8 11 9.9e-06 0.00059 20.0 0.9 1 23 409 431 409 431 0.99

9 11 0.00082 0.048 14.0 0.8 1 23 438 460 438 460 0.96

10 11 7.4e-06 0.00044 20.4 0.1 1 23 466 488 466 488 0.97

11 11 9e-07 5.3e-05 23.3 2.1 1 23 494 517 494 517 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0019	0.11	12.9	0.1	2	23	202	223	202	223	0.95
2	11	0.021	1.3	9.6	0.4	1	22	226	247	226	250	0.86
3	11	0.022	1.3	9.5	0.2	2	23	260	282	259	282	0.96
4	11	0.00023	0.014	15.7	0.2	1	23	288	310	288	310	0.97
5	11	0.0026	0.15	12.4	1.8	1	23	316	339	316	339	0.96
6	11	0.046	2.7	8.5	0.1	1	23	345	368	345	368	0.93
7	11	1.5e-05	0.0009	19.4	0.7	1	23	377	399	377	399	0.99
8	11	9.9e-06	0.00059	20.0	0.9	1	23	409	431	409	431	0.99
9	11	0.00082	0.048	14.0	0.8	1	23	438	460	438	460	0.96
10	11	7.4e-06	0.00044	20.4	0.1	1	23	466	488	466	488	0.97
11	11	9e-07	5.3e-05	23.3	2.1	1	23	494	517	494	517	0.98

Sequence Information

Coding Sequence: ATGGAAGCGTCGTCCTGTTTGATTGGCCTCTGTCGGATCTGCGGCACGGCGAGCGAAGAGCTGAAGGACATTTGCTCCGGCGAGATCGACACGCACCTGCAAGTGCTGCGCTTCCAACTGTCCGTTGACGACGGCCTGCCAACGGGCGCTTGTCCCTCGTGCGTGCGCAAACTGGCCTCAATCCACGAGTTTGTCACGTTGATGCAGCGGACCGACGAGTGCCTGCGAGTCATGCTGTCCAACTCCCTGGACAAAGCAATGAAGGAAGCGGAAGAGGCCATCGAGGAGAACGAATTTTCCTTTCTGGACGCAGCAGGCGACGCACTCAGTATAAACAACCAGGAAGAAGAAGCAGAGGCTACCGCAGAACCTGAGacgaaaaagaggaaaatgcaaaacatggaaaatataaaaaagcagaagTCGCTGTGCGAGAAATTAGCCGAGATGAATTCGAAAATGAAAGAGACCGAACAACTGAACGCCACTTTAAATTTGCAGGCGTCCACCTCCGGACCGTCGTCGGTGCTCGAGCTCATCACGAAAAACCAGCCCAAATCTCGGACGCGGATTCGACTGGATAACTCGGAGACGAGCATCCGCACGTGCGACGAGTGCAACATCATGTTCTCGAGCGGCGACCTACTCGAGCAGCACCGGGCCGAGCACGTCGTTTTTCGGTGTCACGTGTGCGGCGCCAACTTCAACACGGCCCTCATCCTGGCGAGCCACCTGAAGCGAAACCTGCACCGAGTGGCGCTCAAGGACACCAAGTGGACGTGCAGCGAGTGCTTCATGGTGAGCAAGGACAAGGGCTCGATGCTCGAGCACGTTCGCTCGGTGCACACCAAGGAACGGCCGTACGCGTGCGACTCGTGCGACCGAAGGTTCGCAGTCAAGCGGGCCCTGACGATGCACGTCAGGGAGCACAAGCAGGACTGGTCGCACGTTTGCAGCTACTGCGGCAAAGGCTTCTTGGTCAAGGAGTACTATCGGATCCACGTGCGCCGGTACCACACCCTGGAGAAGCCGTTCGAGTGCGACCGGTGCGACGCAAAGTACCCTTCCAGGTTGCAGCTGAGCGAGCACGTCCTGGCCAAGCACGAAGGTGGCCGACCCGAGCAGATCTACGAGTGCGGGATCTGCGGAAAGAAGTTCAAAGGCTCGACCGGTTTCAGGTACCACGTGCAGACGCACGAGGTGCCCATCGAGCAGCGGCGCAAGTTCAAGTGCGACTTCTGCGACGCGTCGTTCATCCGCAAGCCGACGCTGATCAAGCACGTGAAGCGACACTGCGGCGAGCAGGAGCAGTACGAGTGCCATTTGTGCGGCAAGAAGTTGGCCACGTCGCACGGCCTCGACCTGCACCTGGTGGTGCACTCGGGCGAGAAGAACCACGTGTGCGAGTTCTGCGGCAAGGCGTTCGCGGCCGCCGGCACCCTCAAGGTGCACATCCGCTCGCACACCGGCGAGAAACCCTATCAGTGCAAGTTTTGCCCCAAACGCTTCACGCAGAGGTCGTCCATCAAGGTGCACATGCGGAATGTGCACCAGTACGAAGACACGGTTGAAAAACTCAATTTGTTTATTGTGTCGTGa
Protein Sequence: MEASSCLIGLCRICGTASEELKDICSGEIDTHLQVLRFQLSVDDGLPTGACPSCVRKLASIHEFVTLMQRTDECLRVMLSNSLDKAMKEAEEAIEENEFSFLDAAGDALSINNQEEEAEATAEPETKKRKMQNMENIKKQKSLCEKLAEMNSKMKETEQLNATLNLQASTSGPSSVLELITKNQPKSRTRIRLDNSETSIRTCDECNIMFSSGDLLEQHRAEHVVFRCHVCGANFNTALILASHLKRNLHRVALKDTKWTCSECFMVSKDKGSMLEHVRSVHTKERPYACDSCDRRFAVKRALTMHVREHKQDWSHVCSYCGKGFLVKEYYRIHVRRYHTLEKPFECDRCDAKYPSRLQLSEHVLAKHEGGRPEQIYECGICGKKFKGSTGFRYHVQTHEVPIEQRRKFKCDFCDASFIRKPTLIKHVKRHCGEQEQYECHLCGKKLATSHGLDLHLVVHSGEKNHVCEFCGKAFAAAGTLKVHIRSHTGEKPYQCKFCPKRFTQRSSIKVHMRNVHQYEDTVEKLNLFIVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -