Ntri002318.1
Basic Information
- Insect
- Neocloeon triangulifer
- Gene Symbol
- Zfpm1_1
- Assembly
- GCA_031216515.1
- Location
- JASKYO010000003.1:3232590-3236592[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.057 3.4 8.2 0.1 2 23 5 26 5 26 0.97 2 14 5.6e-05 0.0033 17.7 1.4 2 23 459 481 458 481 0.96 3 14 1.1 68 4.1 0.9 1 23 486 510 486 510 0.92 4 14 2.5e-05 0.0015 18.8 0.1 2 22 513 533 512 533 0.94 5 14 0.00013 0.0074 16.6 3.7 1 23 540 562 540 562 0.97 6 14 1.4e-06 8e-05 22.8 0.5 1 23 568 591 568 591 0.92 7 14 1.8 1.1e+02 3.5 2.3 2 23 602 624 601 624 0.91 8 14 0.00061 0.036 14.4 7.0 1 23 629 652 629 652 0.96 9 14 0.00073 0.043 14.2 0.2 2 23 671 691 670 691 0.97 10 14 9.9e-06 0.00058 20.0 1.3 1 23 697 719 697 719 0.93 11 14 5.9e-05 0.0035 17.6 0.7 2 23 728 751 727 751 0.95 12 14 0.011 0.62 10.5 4.4 1 23 757 779 757 779 0.98 13 14 8.1e-06 0.00048 20.3 5.1 1 23 785 807 785 807 0.98 14 14 0.00053 0.031 14.6 6.6 1 23 813 835 813 835 0.99
Sequence Information
- Coding Sequence
- ATGGAGGACCCTGTGTGTCCCGTGTGCACCCTGTCGGTGCGCAAGGGCATCTCGCTCGAGGAACACCTCAACACGCACCCCAAGGATCAGGTGATCCATGCGTTGATACGAAGGTGTGTGACCGCGGCCTCCGCGGCCGCCCCTGCGGCCTCACCTCTTCAGTTTGTGCCGACGCTGCCGACTAACTCGTACACGCCGTTCAGCCTTTTCGTGCAACCCCCGAGTTACCTCCATTACAATCCAGTGCCAGCGCCATTTGTGGCTCCGGGGCCTGTTTTCAGCGCCTCCAGCCCCCGACCACCGCCTCCGCAGGCCTCTCCAACACACACCCAGGCCAGCGGCACACCACTTATCAGACCCGCTGCAGcagtTTCGCCAGAGAAGGTAATTGCCAACCAGGCAAAgcttgataaaaatgaaacaccAGACGAAGCTGGCAAAAATGAGGACGAGGATGAACATTTTTACGAGAGCAACGAAGAAGAAGATGAGCCGCAGAATGACAAGTCAAGAGCAGCTTCACCTGAAACTCAACCCGAAGcTGCATCTGGTTCGTCTGGAGCTTCTACTGCCAAATCAGCGCTGATGACACATACTGTGTTCCGTGAAAATGCAACTGTGGTCGAAAACGTCTTCATCGATATTAAGGAGGAACTTGCTCAAATATCAAGAAGCAATGTTGCCAATGCACAAGGCTGCAGTTCAATCTCGCAAACCTTAGAACTGATCGTCAGACAGAAGGAAGAGGAGATGGTGCGTTGCTCCGAGGTGTTGGACGCTCATTCCGACCGCTCGGATAGCTTCCAGGGACCTAGTGAGATCGAGCAGGGAGAAAATAAGGGCGAAATTGTGCTCGGCATTTCCAACGACGAGTATGAAGCATCGGACCATTTCAGCGTTGGTCCTCATTCACCAAAAGACAATGCCTCTATCAGAGACATCCAGACTGATGAAACGATGCCTCCGCAGGGTGAACTCAGTGAGCAGGAGAGTATCGGGGGTGACTCTGCCTCTCTCTGGGGACCTGCAGCCGAAGATGTGTTCTCGGGATTAGCAATTCAGAGGAGGTCTGAAACTCCTCACTTGCTGACCGACTGGCAGCCCTTGGCGGCCGCTGCATCCCGACATTCGGAAGCAGCGACTGCCAGCACTTCAACCTCTACCCAAAGTAGTAGTCACACCGAACGCAACATGGTGTTCTGTGGGACTATTGTAAACAGAGGAATTCCCATTGGCAGTGGAGGAAACCAATGGCGTCCCGTCGACCAAGATCTCAAGCCAGCCGAAAATCAGGAACCCGTAGAACAAAAAGTACTAATGACTGTGATGGGTGAAGAAACTCTGCTGGTGGAGCAGTCTGTGCGTAGACAGCAGGTTTGCTCCGTCTGCAACCAGACCTTCAACAGCTACCGCGAACTGCAGAACCACCGACGCAAAGAGCATCGCAAAACCAAGTACAGGTGCCCCATTTGCGTGGTGCCATGCGAGTTTTCGGAGAGGAAGGACTACTTGGAGCACACCAAGTCTCACCCACTCGAGTGTCCTCTGTGTGGAAAGACCTTCAAGAGTTTGCCCAGCCTCAGTCTGCACATGAAGCGCGAGATGAACATTCGTCCTCACAAGTGCCAAGTGTGTGATAAGAGTTTCATAACCAAGCAGAAACTCATGGAGCACTCCAACAAGCACTCTGGGCTCACACCTTATGACTGCAAGATATGTGGTAAAGGTTTTCGGCGCTACAGTAACCTGATTCAGCACAGGGATTGGCTCCATTTGCGGAAACGCAAGCCTCCGATCGATTTGCATTGTAGCTTCTGCGAACAGaTTTTCCACTCGAAGAAGAGAATGGAGTGGCACCTGGAGGAGGCTCACTTTCCGCAGCCGCATGTTTGCGCCCACTGCCCCCAGCGATTTACCCACGCCTCCTGTCTGACTCGCCACGTCCGCCAGCTCCACGACCGCAAGTACCTGCCACAGGCCAAAGAGGGAGGACCCAAAAAGGGGTACAAGGAATGCACCGAGTGCGGGGGTGTTTACTCGAAGACCTCTCTTGCCGTGCACATGCGCACTCACTCAGGGATCAAGCCGTACAAGTGCACTATTTGTTTCaagGCGTTTACAACTCGTTGGAACCTGAGCCAGCACATGTGGACCCACGAGTCTCCAGCCCAGCTGCCTCTCAAGTGTGACGTCCAGCAGTGCCGAAAAGCCTTCTACCGAAAGGAAGACCTGGAGGCGCACCGGCGTTCGCACACCAAGCACAAGGCGTACACCTGCAACGTGTGCGGAATGAAGTTCCTGCGCAAGTCGAACTGCATGCGCCACTACAGAGAACACGTCAAGGACAAAGAGCACACATGCGAGATCTGCAGCAAGACGTTCCACAGGTCGTACTACTTGGCTGAACACATGCGCACCCACTCGGGGGAGAAGCCCTACTCGTGCCACATCTGTGGCAAGAACTCGACCACCAAGTCCAACCACAACAAACACCTCAAAACTCACTTGGGCAAGGAACCCGTCACTCCCGAAAACTAA
- Protein Sequence
- MEDPVCPVCTLSVRKGISLEEHLNTHPKDQVIHALIRRCVTAASAAAPAASPLQFVPTLPTNSYTPFSLFVQPPSYLHYNPVPAPFVAPGPVFSASSPRPPPPQASPTHTQASGTPLIRPAAAVSPEKVIANQAKLDKNETPDEAGKNEDEDEHFYESNEEEDEPQNDKSRAASPETQPEAASGSSGASTAKSALMTHTVFRENATVVENVFIDIKEELAQISRSNVANAQGCSSISQTLELIVRQKEEEMVRCSEVLDAHSDRSDSFQGPSEIEQGENKGEIVLGISNDEYEASDHFSVGPHSPKDNASIRDIQTDETMPPQGELSEQESIGGDSASLWGPAAEDVFSGLAIQRRSETPHLLTDWQPLAAAASRHSEAATASTSTSTQSSSHTERNMVFCGTIVNRGIPIGSGGNQWRPVDQDLKPAENQEPVEQKVLMTVMGEETLLVEQSVRRQQVCSVCNQTFNSYRELQNHRRKEHRKTKYRCPICVVPCEFSERKDYLEHTKSHPLECPLCGKTFKSLPSLSLHMKREMNIRPHKCQVCDKSFITKQKLMEHSNKHSGLTPYDCKICGKGFRRYSNLIQHRDWLHLRKRKPPIDLHCSFCEQIFHSKKRMEWHLEEAHFPQPHVCAHCPQRFTHASCLTRHVRQLHDRKYLPQAKEGGPKKGYKECTECGGVYSKTSLAVHMRTHSGIKPYKCTICFKAFTTRWNLSQHMWTHESPAQLPLKCDVQQCRKAFYRKEDLEAHRRSHTKHKAYTCNVCGMKFLRKSNCMRHYREHVKDKEHTCEICSKTFHRSYYLAEHMRTHSGEKPYSCHICGKNSTTKSNHNKHLKTHLGKEPVTPEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -