Ntri014098.1
Basic Information
- Insect
- Neocloeon triangulifer
- Gene Symbol
- -
- Assembly
- GCA_031216515.1
- Location
- JASKYO010000018.1:912951-917655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.5 87 3.8 1.0 3 23 200 223 196 223 0.85 2 18 5.2e-06 0.00031 20.9 0.1 3 23 231 252 230 252 0.97 3 18 5.5e-06 0.00032 20.8 1.5 3 23 263 283 262 283 0.99 4 18 0.00028 0.016 15.5 0.6 1 23 289 311 289 311 0.98 5 18 0.069 4.1 7.9 6.3 1 23 318 340 318 340 0.98 6 18 0.0044 0.26 11.7 0.2 1 23 347 370 347 370 0.95 7 18 0.00094 0.055 13.8 2.5 1 23 376 398 376 398 0.98 8 18 0.00094 0.056 13.8 1.0 2 23 405 427 404 427 0.94 9 18 0.21 12 6.5 0.8 2 23 457 479 456 479 0.95 10 18 0.0012 0.071 13.5 3.2 1 23 503 526 503 526 0.96 11 18 0.0011 0.065 13.6 0.0 1 20 532 551 532 553 0.95 12 18 0.12 7.1 7.2 2.0 3 23 565 586 565 586 0.94 13 18 0.0012 0.073 13.4 2.2 3 23 592 613 590 613 0.94 14 18 1 62 4.2 0.1 2 23 621 643 620 643 0.91 15 18 0.0014 0.08 13.3 0.3 1 23 649 671 649 671 0.95 16 18 2.3e-06 0.00014 22.0 2.7 1 23 677 699 677 699 0.98 17 18 5.3e-05 0.0031 17.8 2.6 1 23 705 727 705 727 0.99 18 18 0.00022 0.013 15.8 3.5 1 23 733 755 733 755 0.97
Sequence Information
- Coding Sequence
- ATGGCAAACGTGGCGAACCTTTGTCGCCTGTGCGGCACCAACACAATCGGCATTGTGCGGCACAACATCTTCGAGGGCGAAGGGTTGGCCAAGAAATTCGCCGACAAGATCGCCGACTGCCTGCCTGTGAACGTGTCGATCGAGGACCGTTTGCCGAAAATCCTGTGCGGCGAATGTTCCTACAAACTTGACCTTTTGAGCGATTTTAGAGATGTTTGCGTTAAGACTGAGACGTTGCTTCTGTCGTTGATTGACGGCATTAAGCATGAGGTTTGCGATGTTGATGCTGAAGAAGAAGAGGTGAAAGGGGAGGTTGTCCAGAGACGATCCTCGCGTCGGACAAGCCAGAAGCGGGCCTTGGAGGAAATCGAGGAGAGTGAAAAAGAAGCCTCGGAGGATGACTTTTGCATGGACGACGGAGGCGACCGTGACGATGACGACGAGGACGAAGAGTTTGTGGTGAAAACGCCTGCGAAAAAGAGGAGCAGGAAGAGTGGAGAGCCGAAGAAGCCTGAGTATGACCTTTTGTTACAGAGGTACTCGAATCCAAGAAGCCAAAGAGTGGGGGTTGAAGGGGGTGTTGTGTGCTCTGGTGATTGCAGGAGCGGCGTTTGTGGCGCGTGCGGGGCTCAAACCAAGGACCTGCGCCGCCACACGATCGCCAAGCACACGCGGGACTTTCCGGTCGCGTGTCCCGAGTGTCCGAAGCGCTTCGTCAGCCGCTCCGAGCTCAACTCGCACGGCCGGCGCGCGCACGGCGCCCACCGCAAGGAGATGAGTCTGCTGTGCAAGTACTGCGGCCGCTCCTTCTCGCGCAAGCAGTACCTCGTCGACCACGAGCGCAAGCACCGCGACGAGCGGCCCTTCCAGTGCGCCACCTGCGGAAACTCGTACTACTCCAAGGTGCTGCTGAAGAGCCACGAGCGTGTGCACACGTGCTCGAGCTACTCGTTCGAGTGCGACCTGTGCCACATGAAGTTCACGACGCAGACGGGGTGCCGGGCGCACCGGAAGCGCCACTTCGAGGAGAACCGGCGCTTCGAGTGTCCGGCGTGCGGGCAGCGCTTCTTCAAGCGCGCCACCATGGAGGCGCACCAGGTCAGCCGCCACACGCACGTCAAGCCGTACGAGTGCGCGCTCTGCCGCAAACGCTTCCCCTGCAAGTACGACCTGCAGAAGCACATCGAGACGCACCTGCGCATCAAGTCGCAGGTCTGCGAGTTCTGCGGCGCCGCCTACTTCCGCGCCGACCACCTGCGCAGGCACAAGATGCAGCAGCACCGCGAGCTCGTCCCCGCCTTCAGGAAATCGAAGGAAAAGTTTCCCTGCGTTCCTGTCAAAGTGGAAATCGTGGAGAACGAGAAGCTGGAGTGCTCCAAGTGCCAGAAAATCCTCAAGCTGCGCCACCTGTGGATTGCGCACGAAAAGCGACCCCACACTCACTTTTGCCAGACCTGCCTTCGGTACTTTGTGTCCTACAGGGACTACACCAGCCACAACTGCATCTACAAGTGCACTTACTGCGACAGGAAGACCAAGTCGAAGGAAAAGCTGGACCTCCACATTTACCGGTTCCACGAAGGCAACGAAAGGTTCGTTTGCGACATCTGCAAGGACGAGTTCCGAACCAAGTCTAGTTTGGCCACTCACATCATTGCCAAAGGCTTTGTCCACACgCCCACTGTGACTTGGTGCGTAAAGTGCTGCGAAGACTTCAAAACTCCGCAGTGGCTGAAAAAGCACCAGTTGCGCGTCCACGAGGGCAAGATCATTTGTCACCAGTGCACGAAGACGTTTCCCACCAAGGAGGAGCGCATGCGGCACACCAAGGAGATGCACCCCAGGGTCAAGGAGAAGGTCAAGTGTCCCCAGTGCGACCTCATCCTCAGCTGCAAAGGCGGCTTGGTCAAGCACGTCGACGTTGTGCACAAGAAGCTCCGGCCCTTCCTCTGCCCgGTTTGCGGGAAGAGTTATCCTTTGAAGAAGTCGCTCGAGTTCCACATGACGATGCACACCGGGGAGAAAAATCACGTGTGCAAAGTTTGCGGACACAAATTCGCGCGGATCGAGAATCTGAAGCAGCACATGCGAATCCACAACAACGAGAAGCCGTACAGCTGCGAGTTCTGTGGACGGCAATTCCGGCAGTGCGGACCCCTCAACATCCACCGCCGGACGCACACTGGGGAAACGCCCTACGCGTGTCATTTGTGTCCACAGAAGTTCATCTCCAACAACCACCTGAAACTGCACCTCAATAATCATCccgcttattaa
- Protein Sequence
- MANVANLCRLCGTNTIGIVRHNIFEGEGLAKKFADKIADCLPVNVSIEDRLPKILCGECSYKLDLLSDFRDVCVKTETLLLSLIDGIKHEVCDVDAEEEEVKGEVVQRRSSRRTSQKRALEEIEESEKEASEDDFCMDDGGDRDDDDEDEEFVVKTPAKKRSRKSGEPKKPEYDLLLQRYSNPRSQRVGVEGGVVCSGDCRSGVCGACGAQTKDLRRHTIAKHTRDFPVACPECPKRFVSRSELNSHGRRAHGAHRKEMSLLCKYCGRSFSRKQYLVDHERKHRDERPFQCATCGNSYYSKVLLKSHERVHTCSSYSFECDLCHMKFTTQTGCRAHRKRHFEENRRFECPACGQRFFKRATMEAHQVSRHTHVKPYECALCRKRFPCKYDLQKHIETHLRIKSQVCEFCGAAYFRADHLRRHKMQQHRELVPAFRKSKEKFPCVPVKVEIVENEKLECSKCQKILKLRHLWIAHEKRPHTHFCQTCLRYFVSYRDYTSHNCIYKCTYCDRKTKSKEKLDLHIYRFHEGNERFVCDICKDEFRTKSSLATHIIAKGFVHTPTVTWCVKCCEDFKTPQWLKKHQLRVHEGKIICHQCTKTFPTKEERMRHTKEMHPRVKEKVKCPQCDLILSCKGGLVKHVDVVHKKLRPFLCPVCGKSYPLKKSLEFHMTMHTGEKNHVCKVCGHKFARIENLKQHMRIHNNEKPYSCEFCGRQFRQCGPLNIHRRTHTGETPYACHLCPQKFISNNHLKLHLNNHPAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -