Ntri010238.1
Basic Information
- Insect
- Neocloeon triangulifer
- Gene Symbol
- -
- Assembly
- GCA_031216515.1
- Location
- JASKYO010000013.1:7275418-7280414[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.001 0.062 13.7 1.4 2 23 32 53 31 53 0.96 2 21 9.5 5.6e+02 1.2 0.1 2 12 63 73 62 86 0.79 3 21 0.033 2 8.9 1.0 1 23 90 113 90 113 0.93 4 21 0.19 11 6.5 0.3 2 23 153 174 153 174 0.95 5 21 0.00082 0.048 14.0 4.4 1 23 180 202 180 203 0.95 6 21 5.2 3.1e+02 2.0 0.6 3 23 218 239 217 239 0.92 7 21 0.00081 0.048 14.0 1.6 1 23 251 273 251 273 0.97 8 21 0.0026 0.15 12.4 3.9 1 23 279 302 279 302 0.95 9 21 0.00012 0.0071 16.6 1.5 1 23 310 332 310 332 0.96 10 21 9.2e-05 0.0055 17.0 0.3 1 23 338 361 338 361 0.93 11 21 0.00013 0.0079 16.5 0.6 1 23 366 388 366 388 0.98 12 21 0.12 6.9 7.2 0.3 2 23 505 526 504 526 0.96 13 21 4.9 2.9e+02 2.1 1.1 1 23 551 571 551 571 0.78 14 21 1.5e-05 0.00089 19.5 0.4 3 23 579 600 577 600 0.97 15 21 0.031 1.8 9.0 1.0 3 23 608 628 607 628 0.98 16 21 7.4e-07 4.4e-05 23.6 1.2 1 23 634 656 634 656 0.97 17 21 0.00016 0.0096 16.2 3.7 1 23 663 685 663 685 0.98 18 21 0.015 0.87 10.1 1.8 1 23 692 715 692 715 0.97 19 21 4.4e-06 0.00026 21.2 0.2 1 23 721 743 721 743 0.98 20 21 0.0003 0.018 15.4 6.9 1 23 748 771 748 771 0.98 21 21 0.0047 0.28 11.6 0.2 2 23 779 801 778 801 0.95
Sequence Information
- Coding Sequence
- atgcttatCCTGGATGGGGTATTAGTTTTCGTGCTGAAGGAGGAAGACCCGCCGGCGGAGGCGGCCGGGCCGGTGGTGGCGCTGGACGCGTTGACGTGCGACGCGTGCTTCAAGCCGTTCCACACGCTGCCCGACCTGAAGCGGCACCTGCGTTCGCACGCCAAGCGCATCACGAACCGGCCGACGCCGTGTCCCTTCTGCCGGCAGCGCTTCGCCCTGCGCAGCGCGGACCGCCGCGCGCACATCGACCGCTGGCACCCGCCCAAGTACCGCTGCGAGCACTGCACGTACGTGTCGCGCGCCCTGTCCGACCTCGAGGACCACTTCCAGGCGCGCCACGTCGTCCACGTCCGAATCCGCCGCGAGTTCTTCTGCGACCTGTGCCCCGACCGCAAACCCTATCTCAAGCGACGCAGCATGCGCGAGCACTTCCAACGCCGACACTTGAAACTGAACGTTTGCCAGCACTGCGGGCGCGCCCACGGCAGTCCAGCGGCGCTGCTGGTCCACGAGCGGCTGCACACCGGCGAGCGGCCCTACGTCTGCGAAATGTGCGGCCGGGCATACCACAACGCGTCCAGCCTCAACATGCACAAGCACTCGCACCACCGAGGTGGCGCCACCAAACGCGCCCCGCAGGACCGTCTGCTGTGCCAGTTTTGTCACGAAAGGTTCTTGACCCTGGAGGCCATCCGGGAGCACCTCGAGTCGGTGCACGGGGTCATGCGTGACTCGACCCGAGAGAGGGGTTTCGAATGCGAAGTTTGTCACAAGCGGTTCACCGCCCTGCAGACGATGCGCGACCACATGTTGCTGCACCGCGGCGAGCGGCCGCACGAGTGCCACATTTGCCGCAAACGCTTCACGACGCGGAGCGTCCGCAACAAGCACGTCCTGGTCGTCCATCAGGGCATCGACGAACGGCGCTTCGCGTGTTCCGCCTGCGGGAAGCGATTCGTCAACCGACACAAGTTGACGGTGCACGAGCGGCTGCACACGGGCGAACGACCCTTCACCTGCGAGATCTGCGGCAAAACCTACACCAACGCCAGCAGGGTCAAGGAACACAAGATGGCCGTGCACAAAATCATGCCCTACAAGTGCGACAAGTGCACCCGCGAGTTCAAGGTCGGCTCCGAGTTGCGGCTGCACCAACTGGTGCACGCGCAGCCGCCGAaccagccgccgccgccggtgcACGTGGACGCAGTCAAAGCGGAAGATGCCGCTGGTACGTCAACGGTGCCACCACCACCTCCGGCCAGGATTCAGCGCCGCTCGGCCAAATTCGCCATGCGCTCGATCGCCAAAGTGGCCAAAATGGAGGAAAAGGTGGAGAAGGAAATCCAACAGTTTGCCTCTCCGCAGGAAGTGGCCAGACTGATCAGGGTCGCGAACCTCGACGTGGTCGCGCCTGAATACCAGCACGAGTGCTGCCGCTTCTGCAAACTGTACGTCGGAGATACCGAGGCCAAGGAGGCGCACGTCCGCGAGCAGCACCCCGAAAAGGTCACGTGCACCGTCTGCAACGAGGTGCAGCGCAACCAGTTAACCCTGAAAAGTCACCTGCAGGCGCACAAGGACGAGCAGGAGATGAAACGCGTGAAACAGATCAAGGTGCGAAACAAGGATGGCAAACTGGTGCGGCGGCACCATTGCAAGCTGTGCGACCAGGTGGTGGCCAACCTGAAGAGGCACGTCGTCGTGGCGCACACCAAGGAGTACCCCTTTGGCTGCGATGACTGTGAGCGCCGCTTCCCGACGTCCAGCGAGCTTCGGAGCCACGTCCGgataaaacacacacaccagTTTCCCTCGTTGTGCGTCGAGTGCGGCAAAGGATTCAACTGTCGGACGGCCTTGGAGGACCACGAGCGCAAGCACCGCGGCGAGAGGCCGTTTGTTTGCGACATTTGCGGGAAGAGCTACTTTTCCAAGCACAACCTCCAGGTGCACATCAAGGCGCACCAGCAGAACCCGATGGAGTTCCAGTGCGACGTGTGTGGCAAGCACTACCCTAGCCAACAGCAGGTGCGCCATCACCGGATGATGCACTTCGAGGAGAACAGGAGGTTCCAGTGCAAGGTGTGCGAGAGCCGCTTTTTCAAAAAGTCCACCCTGGACTACCACGTGATGAGGGTGCACACCCTGGAGCGGCCGTTCGAGTGCGACGAGTGCGGAAAGGCGTTCATCATGCGCAGCATGCTGGTCGAGCACACCAGGAGACACCTGGGCGTCAAGTTCCCGTGTCAGCACTGCAGTTGCACCTACTTCAAAAAGTACAACCTGCGCAGACACATGATGACTGCGCACAAGGGCCACATGGTCACCTGGATGTGCGACCTGTGCGGGAAGGAATACTTTTCCGAGAGGTCCTTGATTGACCACAAGATGAAGGAGCATCCTGACCAGTTCCAACCGATCTTGGACGCACATGTTGAGGACGCAGTGGCCCTGGAGGTTATTGCTGCAGAGCTGGAAAATGCAGACACGCAAGAAACTgtaaaagtttatttgcaACTTTAA
- Protein Sequence
- MLILDGVLVFVLKEEDPPAEAAGPVVALDALTCDACFKPFHTLPDLKRHLRSHAKRITNRPTPCPFCRQRFALRSADRRAHIDRWHPPKYRCEHCTYVSRALSDLEDHFQARHVVHVRIRREFFCDLCPDRKPYLKRRSMREHFQRRHLKLNVCQHCGRAHGSPAALLVHERLHTGERPYVCEMCGRAYHNASSLNMHKHSHHRGGATKRAPQDRLLCQFCHERFLTLEAIREHLESVHGVMRDSTRERGFECEVCHKRFTALQTMRDHMLLHRGERPHECHICRKRFTTRSVRNKHVLVVHQGIDERRFACSACGKRFVNRHKLTVHERLHTGERPFTCEICGKTYTNASRVKEHKMAVHKIMPYKCDKCTREFKVGSELRLHQLVHAQPPNQPPPPVHVDAVKAEDAAGTSTVPPPPPARIQRRSAKFAMRSIAKVAKMEEKVEKEIQQFASPQEVARLIRVANLDVVAPEYQHECCRFCKLYVGDTEAKEAHVREQHPEKVTCTVCNEVQRNQLTLKSHLQAHKDEQEMKRVKQIKVRNKDGKLVRRHHCKLCDQVVANLKRHVVVAHTKEYPFGCDDCERRFPTSSELRSHVRIKHTHQFPSLCVECGKGFNCRTALEDHERKHRGERPFVCDICGKSYFSKHNLQVHIKAHQQNPMEFQCDVCGKHYPSQQQVRHHRMMHFEENRRFQCKVCESRFFKKSTLDYHVMRVHTLERPFECDECGKAFIMRSMLVEHTRRHLGVKFPCQHCSCTYFKKYNLRRHMMTAHKGHMVTWMCDLCGKEYFSERSLIDHKMKEHPDQFQPILDAHVEDAVALEVIAAELENADTQETVKVYLQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -