Basic Information

Insect: Neocloeon triangulifer
Gene Symbol: -
Assembly: GCA_031216515.1
Location: JASKYO010000004.1:1099493-1101964[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.33 19 5.8 0.4 3 23 142 163 141 163 0.94

2 16 0.0089 0.52 10.7 1.4 2 23 221 243 221 243 0.95

3 16 0.0023 0.14 12.6 4.6 1 23 249 271 249 271 0.97

4 16 1.1e-05 0.00067 19.9 1.6 1 23 277 299 277 299 0.99

5 16 1.3e-08 7.7e-07 29.1 1.9 1 23 305 327 305 327 0.98

6 16 0.35 21 5.7 5.6 1 23 336 358 336 358 0.91

7 16 5.8e-05 0.0034 17.6 3.0 1 23 364 386 364 386 0.98

8 16 2e-06 0.00012 22.2 3.1 1 23 392 414 392 414 0.98

9 16 0.00037 0.022 15.1 0.1 1 23 420 442 420 442 0.97

10 16 0.00018 0.01 16.1 0.4 1 23 463 485 463 485 0.98

11 16 2.8e-06 0.00017 21.8 1.8 1 23 491 513 491 513 0.98

12 16 0.0063 0.37 11.2 1.0 1 23 519 541 519 541 0.97

13 16 9.9e-06 0.00058 20.0 0.2 1 23 547 569 547 569 0.98

14 16 0.00093 0.055 13.8 5.7 1 23 575 597 575 597 0.98

15 16 1.9e-06 0.00011 22.3 1.0 1 23 603 625 603 625 0.99

16 16 0.07 4.2 7.9 5.3 1 23 632 654 632 654 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.33	19	5.8	0.4	3	23	142	163	141	163	0.94
2	16	0.0089	0.52	10.7	1.4	2	23	221	243	221	243	0.95
3	16	0.0023	0.14	12.6	4.6	1	23	249	271	249	271	0.97
4	16	1.1e-05	0.00067	19.9	1.6	1	23	277	299	277	299	0.99
5	16	1.3e-08	7.7e-07	29.1	1.9	1	23	305	327	305	327	0.98
6	16	0.35	21	5.7	5.6	1	23	336	358	336	358	0.91
7	16	5.8e-05	0.0034	17.6	3.0	1	23	364	386	364	386	0.98
8	16	2e-06	0.00012	22.2	3.1	1	23	392	414	392	414	0.98
9	16	0.00037	0.022	15.1	0.1	1	23	420	442	420	442	0.97
10	16	0.00018	0.01	16.1	0.4	1	23	463	485	463	485	0.98
11	16	2.8e-06	0.00017	21.8	1.8	1	23	491	513	491	513	0.98
12	16	0.0063	0.37	11.2	1.0	1	23	519	541	519	541	0.97
13	16	9.9e-06	0.00058	20.0	0.2	1	23	547	569	547	569	0.98
14	16	0.00093	0.055	13.8	5.7	1	23	575	597	575	597	0.98
15	16	1.9e-06	0.00011	22.3	1.0	1	23	603	625	603	625	0.99
16	16	0.07	4.2	7.9	5.3	1	23	632	654	632	654	0.96

Sequence Information

Coding Sequence: ATGTGTCACCAGCTGGTAAAATGTTGCGGAGAAACGGAGCAAAGACTGAAAGAGCTGGTTTCCAAAGAAGAACTGGAGGAAAGCAACCaaaaaattattgagaCTGGACTAGAGTGCTTAAATACTCCAGAATCTGTCACTGCTGTGACATGCATGTCGCAAGAAGAACACAAACTTCCTTCAGGGCTGGATTTTGCAAACCTAAAATCAAAGgtAGCGGAAAAATCTACTATTAAAGTTGTTGTTGTGAGGCTTCATGGTTCTGATGACAAAACAAATGATAATTCAATACCAGAAAATGGGTCGTCCTTGCTGGCAGATTCTCATGAGCTCTTCCTATGCACAGTGTGCAATGAAAACATTCAGGGCGTTGAATCTGTTGTGAAACACCAGCGCGACGTTCActcaattgaaatgaatttctgTCAGTGGTGCAAAGAACTGTTTGATTCACAGCAAGTATTGGAATCGCATCAGCTTGAAAAGCACCTTGGCGAATGGCTGAAAGTAACAAACGTTGCTGAAATTCAGCTGTTGAGAGAGGGTTCCATGAAAATGTCCAAAGAATTCAACCAAATGGAAAAGTCTCTGCAGAGCAAAATAGTGGACGCTATTCAGGCTATGGTTGGACAACAGAATTTGAAGGAAACGGGTACAGCTACGTGTAGACTTTGCAGACAGACCTTCAGCAGTTTGGCACTGCTGCAAGAGCATCATGCGAAAGCTCATGAAGATCCGAAAGGCTTTACTTGTCACTACTGCCAAAgcaatttttacacaaaacgAATGCTATTACGTCACATAACTGAGCATTCAGAATATAAAGGTTTTCGATGTACAGAGTGCCTGCGGGCCTTTAACACCAAAACTGGCTACAATATACACATGCGAACACATAGTGAGGAGAAACCATACATGTGTCCCGAGTGTGGAAAAACATTTAAGCACAGCTCGAATCTGCGAGCTCATGAAAAGTCTCACTTGCCGGACGACCAAAAGAAGAGATTCAAGTGCCCTCACTGTGAAAAGACTTACCGATGTCAATTTTTGGTGGACGAACACTCGAGGACGCACACTGGAGAGCGGCCGTTTTCCTGTGACGTTTGCTCCAAAAGTTTCCACCGCAAGCAGCAGTTGTCTCAGCATTTGCTGGTGCACAGAACTGATCTCACGTTTGAATGCCACTTGTGTGGTTCAAGATTTAACCGAAAGGGCAATTTAAATGAGCACATGAAGAAAcacatatataaaaacaagtatgtttgcaaaatttgcaaagagaCGTTCGACACTATTAGCGAAGTGGTTGCTCATCGCAAAGGCCATACCAATGAAGAACTTGCACAGGACAAATCGGAATCGACCGTTCGCCAAACTGAAGCTCGctttgaatgtgaattttgcaAGAAGTTCTTGGCCACAAAAACATCCTTAGCTGCTCATGTTCGGATACATACTGGTGAAAAGCCATTTGAATGTGACACTTGTGGCAAGAAgtTCTCGCAAAAGCCAGCTCTAACGTACCATCGGAAAAAGCACTCGGTCGAAAAACCTCATCGGTGCACTTATTGCTCCGAGGGATTCATTACAAGAACAGCAAGGATTGTTCACGAGCGCATCCACACCAATGAAAAACCCTATTCTTGCCAATACTGTGGAGCTTCTTTTCGAGGGTCTGGCAGCCTAAACCAGCACTTAAGTGTGCACAGTGATGATAAGCGCTTCAAATGCAGCCACTGTACCAGTTCTTTTCATAGGAAGGAATCTCTTCAAATACATGAAAGGATCCACACCGGATTGAAGCCTTATGTTTGCGATCTCTGCGAGAGAGCATTCAAACAAAGAGGGGATTTGACCAAGCACAAGAAGACTCACTCCAAGACCATAAGACAACACATATGCCGTATGTGTGACTTTGTGTGCACTAACAGGAAAACCATGAAGAAGCACGAGGCCACCCACTCAGTCGAGGATGTAGCTATGGTTGCAGGAACTCTAATAACAACTTTCCCGGAAATTACAATTGAAGACGGACATTGTGAAATCATGTTAGATGAGGGAGTAATTGAAGTTGagcaaattcaattacaatcttaa
Protein Sequence: MCHQLVKCCGETEQRLKELVSKEELEESNQKIIETGLECLNTPESVTAVTCMSQEEHKLPSGLDFANLKSKVAEKSTIKVVVVRLHGSDDKTNDNSIPENGSSLLADSHELFLCTVCNENIQGVESVVKHQRDVHSIEMNFCQWCKELFDSQQVLESHQLEKHLGEWLKVTNVAEIQLLREGSMKMSKEFNQMEKSLQSKIVDAIQAMVGQQNLKETGTATCRLCRQTFSSLALLQEHHAKAHEDPKGFTCHYCQSNFYTKRMLLRHITEHSEYKGFRCTECLRAFNTKTGYNIHMRTHSEEKPYMCPECGKTFKHSSNLRAHEKSHLPDDQKKRFKCPHCEKTYRCQFLVDEHSRTHTGERPFSCDVCSKSFHRKQQLSQHLLVHRTDLTFECHLCGSRFNRKGNLNEHMKKHIYKNKYVCKICKETFDTISEVVAHRKGHTNEELAQDKSESTVRQTEARFECEFCKKFLATKTSLAAHVRIHTGEKPFECDTCGKKFSQKPALTYHRKKHSVEKPHRCTYCSEGFITRTARIVHERIHTNEKPYSCQYCGASFRGSGSLNQHLSVHSDDKRFKCSHCTSSFHRKESLQIHERIHTGLKPYVCDLCERAFKQRGDLTKHKKTHSKTIRQHICRMCDFVCTNRKTMKKHEATHSVEDVAMVAGTLITTFPEITIEDGHCEIMLDEGVIEVEQIQLQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -