Basic Information

Gene Symbol
Trerf1_1
Assembly
GCA_031216515.1
Location
JASKYO010000013.1:1481011-1497196[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.7e-09 2.4e-06 27.4 0.1 3 46 983 1026 981 1026 0.96

Sequence Information

Coding Sequence
ATGTGCGGAAAGGCTTTCAAGAGGCAGGACCACCTGAACGGCCACATGCTGACGCACCGCAACAAAAAGCCGTTCGAGTGCAAGGCCGAGGGTTGCGGCAAGTCGTACTGCGACGCGCGCTCGTTGCGTCGGCACACGGAAAACCACCACACGACGCCCGCCGGGGCGGCGAGGGCCACCCCCAGCACGGCGGCCGCCTCCGAGGAGGCCACCTCGTGCATCCAGTATGCGCCCCCGCCCCCGCCGTACCCTTCGACCTCCTCGAGCAACTCGCCCgaggccgcggccgccgcctcGCCTAGTCAGCTGCAGCAACTTTTGTCCTCGCCGTCGGCCAACGCCTCGCCCAACAGCCCCTCCACCTCCAACCAGgctGCAAGTCCCGGTGGCGAAAGCGAAGCGACCGACGGCCTCACGAGACAGCACCTCGAACTCATCCAGCAAATCATGCAGCAGACGCAGCAACAAGCGGCCGCAGcagcggccgccgcggccacCAAAGCCGAAAAGCCGGTCAAGAGCCGCACGTGGACCGCCTCGCAGAACGCGGCGAGTGCGGCGGCCAAGACAACCTCGGCCCAGGCCGCCCCGGCGGCCAACAGCGTCGACCCGAAACCTGTCGAGTGCAACCTCTGCCACCGCAAGTTCAAAAACGTGCCCGCCCTCAATGGTCACATGCGACTGCATGGCGGTTACTTCAAAAAGGACTCTGAAGCAAAAAAGACAGACAAGAAAGACTCAGCTGGTCCGCCGCTGCAGACGGCCAGCGTGAGCGTTCGGGCGCTCATCGAAGAGAAAATCATCCAGAAGCGAATCACAAACCCGTCGCTGCAGCAACAGGCCTCGTCGGCGCCGAGCAGCGGCGCCACCACCCCGGCGGCCCCGACCGCAGCAGCCTCGCTGACGCCGCCAGCAACCTCCTCCACGCAGAACGgagGAAGCACCGCTTCTTCTGGCGAAACGTCTGCCTCGTCCAGCACATTCCCCGCGGCCGCGGCGCCGCCCCCACAGTACCCGGCCGGCGCCAAGACGTTTGTCTTGCCGACGGCGCCGTCACCGGGCCCGCCGCCTGAAAAGGTGCGGCGCCACTCGGACTCATCAGAGCCGTTCGAAAGCGTCGCGATCAAGCGCGAGAGGTCGTGCGGCGACGCCACGACCTCGGTCGCCAGTCCGCTGGCGCTCGCCATCGCCGCTGAACTGGCCGAACAGGCCTCCGCTGGCGCCGCCAGCTTCAACCTGGCCGCCTTCACTGGCGCCGCCGGAGGCGCCACTTTCTTCAACCAGGATGACGTGTTCCAGCAGGTGCCAGAGGCGGTGCTTCAGCTTGCCGAGTCCATCCAGttCCAGGCTGAAGATATGGCCGCGCTTGACGACTTCCAGAGTGCGGACACGAATGGCGAGGCAGCCGTTTTCAGTTCTCAGAACGGCGACGCCACCGGCCAGGAGTCAAACGATTTCCCGGCGTTACAGTCGGTGACTCTGGCCGACATTGCCGCTTTCAGCGCCGTCGCCTCACAGAAGGACTTTGAGTTCTCACCTTCGGCGCAAAAGGATGGCCAAACTGTGTTCGCCTTCTCGCCCCAACATAGTTCAAAGGACAACGGCGGCACTTACAACTTTTCACCGCACACTACGTCACCGCTGCCATCGCCGTTGCAGGGCCACGACTCACCGAGTTTCGCGTACCCAACCCCACCTGCGAGCCAAGAGGGTCCAACCTTTGGACTTCTGCAGGCGGCGCCTCTTGGTTCACCGCACGGCGCCGCCGACTCAACGTTCGCATACTACGCGGGCGCTTTGTCGCCGTCAGCTGCGGCCGTCGAGGCGGCGCTGAATGAGGTGTTGCCGGGCGACGCCTTTTCGCGATCGCACCAACACGCGTTGTTGTACCAGGCGGCGCCAAGTGGCGCCGACGCATCATCAGCCGCGGCGTCACCCCTCTCGGCAACGTCCGTGGCATCACCTATGTCCAGTGTGGCGGCGCCTTCGTCTACGGCCGCGTCACCGGTGGCGCCGTCGGGTGGCGGCGCCGCCTTTGCGCTGCAGATGATGCCCAACTCGGACGACCCTTTGTTGTCGAGCAGCCCGAAGGACTTTGGAGGCAGAAAAAGGTTCGACTTTGGGCTGTTGCGCGGCGCCGCCGGCGACGCCACGGCCATCCTCAGTGGCCTGGGCCTCGTCCTGGAGAACAACGGCGAGCTGCGCTTCTACCCGACCTCGGGGACGGCGTCACCGTCAGTGACGTCGACCACCTGCACCAACCTGCAGCAACAACAGCAGCTTAAGCGACCCAAGGAGGAGCTGGACGACGCCGATCTGTTCCTCAGCCCGTCCAGCGTGGCGCCGCCGACGCAGGCCCTGCCCCGTTTGAAGCGCCCCCGGCCGCGCCCCGACCCCCTCTTCATCCCGGCGCCGCACGAAAAGTCTACGGTGGCGCCACGGGGGCCTTTGCTCTTTAAGTCGCGTCTCAGGGCGCCCCGACTCAAGTCCATCAACAGCACCTTCACGCCGCCACCCATGCTCGACCCCTGTCGCAATGGCGCCGGCCTATTCCACAACCTCAAAAATGAGCCTAACAGCAGTGCTACTACTGAGGACACTGCGATGGACACAGATTCCATGCCACACATCAACATCAGCCACAGACATCAGGTTTCGTACATCCCACCTTGTGAGCCGTGCAAAGAAGTGGCGCACATGGAGTCTTCAAGAGAGCATTTGTTGTGGAATCCGGACGTCCGAGCCTCGGAGGGAGAAATTGACATGTACTTGGAGTTTGCCTGCTGCGCCGCGGTGCCAGGAGGCGGTAGAAATAAGGAATACGCCCTGCATTTGCTCAACATGTGCCACGGCAACGTCAAGGAGGCGATGCTCAAGTTGATGCAGCCAACGCCGTCGCTGCCGGCCGGGCACCCGCTGCTCAGCTACTGCTACTCGGACTCGGCGCGGTGGGCGCACGACGAGATCGAGGCCTTCCAGCAGGCGCTGCTCAGACACGGAAAGGACTTCCGAAACGTCGCCAAAGACGTTTCAAGTAAGAGTGAGGTGCAGTGTGTGCAGTTCTACTATTTCTGGAAGAAGGTTTGTCCCGAGGAGTACCAGCGGCTCAAACTGCTGCGCCAGAGGACCGAGTTGGCCTTTCTGAGAAGCGTCGAGCTGGACGAGCTCACCAATGACAAGCTCGCCTTCCAGgtGCAGCTGCAGCCGAGTGACGCCGAAGTGATCTCAAGCACGTGCTCGGCAGACACGCGCCTCTTCATGTGTGAATACCCTGACTGCTCAGCCAGTTTCAACTCGCGGGCGGCGCTGAACGGGCACGTGCGCATCCACGGTGGCAACGGGCGACGCTCGCCGACGCCCGACGGCTGCAAACGCGTCGCGAGCGGGACGCCGCCGATCGAGGGCCTGAGCGAGGAATTCCCTTGCAAGGTGTGCGGGAAGGTGTTTGGCAAAATCAAGAGTCGCAGCGCCCACATGAAGTCGCACCGGCCGCCGGACGCAGAGCCGAAGAGGCCCAAGGCGGACAACAACAAAACCACCAACactaacaacaacaacaacaacaacggcGGTGGCGACGACTTGGTGCGGCCGTTGCTGACCACGCTGCCCGCCGGCCTGGGCCTCATTTAA
Protein Sequence
MCGKAFKRQDHLNGHMLTHRNKKPFECKAEGCGKSYCDARSLRRHTENHHTTPAGAARATPSTAAASEEATSCIQYAPPPPPYPSTSSSNSPEAAAAASPSQLQQLLSSPSANASPNSPSTSNQAASPGGESEATDGLTRQHLELIQQIMQQTQQQAAAAAAAAATKAEKPVKSRTWTASQNAASAAAKTTSAQAAPAANSVDPKPVECNLCHRKFKNVPALNGHMRLHGGYFKKDSEAKKTDKKDSAGPPLQTASVSVRALIEEKIIQKRITNPSLQQQASSAPSSGATTPAAPTAAASLTPPATSSTQNGGSTASSGETSASSSTFPAAAAPPPQYPAGAKTFVLPTAPSPGPPPEKVRRHSDSSEPFESVAIKRERSCGDATTSVASPLALAIAAELAEQASAGAASFNLAAFTGAAGGATFFNQDDVFQQVPEAVLQLAESIQFQAEDMAALDDFQSADTNGEAAVFSSQNGDATGQESNDFPALQSVTLADIAAFSAVASQKDFEFSPSAQKDGQTVFAFSPQHSSKDNGGTYNFSPHTTSPLPSPLQGHDSPSFAYPTPPASQEGPTFGLLQAAPLGSPHGAADSTFAYYAGALSPSAAAVEAALNEVLPGDAFSRSHQHALLYQAAPSGADASSAAASPLSATSVASPMSSVAAPSSTAASPVAPSGGGAAFALQMMPNSDDPLLSSSPKDFGGRKRFDFGLLRGAAGDATAILSGLGLVLENNGELRFYPTSGTASPSVTSTTCTNLQQQQQLKRPKEELDDADLFLSPSSVAPPTQALPRLKRPRPRPDPLFIPAPHEKSTVAPRGPLLFKSRLRAPRLKSINSTFTPPPMLDPCRNGAGLFHNLKNEPNSSATTEDTAMDTDSMPHINISHRHQVSYIPPCEPCKEVAHMESSREHLLWNPDVRASEGEIDMYLEFACCAAVPGGGRNKEYALHLLNMCHGNVKEAMLKLMQPTPSLPAGHPLLSYCYSDSARWAHDEIEAFQQALLRHGKDFRNVAKDVSSKSEVQCVQFYYFWKKVCPEEYQRLKLLRQRTELAFLRSVELDELTNDKLAFQVQLQPSDAEVISSTCSADTRLFMCEYPDCSASFNSRAALNGHVRIHGGNGRRSPTPDGCKRVASGTPPIEGLSEEFPCKVCGKVFGKIKSRSAHMKSHRPPDAEPKRPKADNNKTTNTNNNNNNNGGGDDLVRPLLTTLPAGLGLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01046645;
90% Identity
iTF_01046645;
80% Identity
iTF_01046645;