Ntri007721.1
Basic Information
- Insect
- Neocloeon triangulifer
- Gene Symbol
- lola_1
- Assembly
- GCA_031216515.1
- Location
- JASKYO010000011.1:11120315-11122999[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.2 4.4e+03 -2.6 0.0 18 29 183 194 183 194 0.93 2 5 0.00014 0.19 11.4 0.0 14 37 290 313 287 321 0.85 3 5 5.4e-13 7.4e-10 38.3 0.0 1 39 328 365 328 370 0.94 4 5 0.00086 1.2 8.8 0.0 19 35 397 413 386 418 0.84 5 5 3.6e-14 4.9e-11 42.0 0.1 6 39 445 478 443 482 0.92
Sequence Information
- Coding Sequence
- atgctgGCAGTCAACTTTCACTGTGCCATTATTCCCAAAATTTACCACACCAGCTGGCATTTATGCGTCGACTCCAAGGCCTCCAAGCAAAACACGAAAAACGCAAACAAGGACGAGGAGAACGAAGAACAGATCTACGATTGTCGTGTTTTTTTGCCGAATTTCAGCCAAACTTTCTTGAGGAACTTAAGattaatcaTCGTCATGGAAAACATTGTCCTGGAGGTTACGAGTAACCCTAACACTGCTGAGGTTGAGGAGAAACTCGTCTGGAAATCATACGCCACAGacatctctttctttttttcggACTTCATGAAGGGATGCGAGTTGGTCGACACCACTCTGGTTGCAGGCGGAGAGAAGATTAGGGTGCACAAGATGGTTCTTTCAGCAACCAGCAGCTTCCTGAAGAAAGTTTTAATGGAGGTAGACACTCCAGAACCATGCATCATTTTGCCTAGTGAAGTAAAAATCGAAGAGTTGAAATTGCTGGTCGACTTTATCTACCGAGGTGAAATAAGGTTCATGATGTCTCAGCTCCCGTCTCTCTCCAAACTGGCTCAAATGCTTGGCATCCCTGGTCTGCCAGGATTTACggaagttttcaataattcaaatgagGAAAAGGATCCTGATAAAGTGACATGGATTGTCGATGAGACTCAGGAGGTTGAAGTgtttgatgatgatgaaattGAAGAGACCTCCAGCAGAACAGTCTCACCTGAAATCAAAGATTCTCTTcttgAAGAAGAACAGAAGGATTCTGTTCCTCGGACTGGACCTCCAGGAAAGCGTTGCagGGCTCCATCCAGCATCTCCTATAGTCAGTCCGACATTGACGAGGGTTTTAGGCTCTTGCAGAGCGGAAAATCAATTGGACAGGCATCCAGAATGACGGGGGTTCCACGAACTACCCTGTATAACAAAGCAAAGATGAGTGGAGTTATCGCCATGCAGGACAAGACTAAGAACTACACAGAAGAGCAGATGGATAGAGCTATAAAGGCTGTTATTAATGGCCAGTCTTTGAATAGAGCTGCTGAATTTTATGGCGTGACAAAAACTGTTCTGTGGAGGCGTTCCAAGGGGTTGAAGCCCGACTCCAGCTTAAAGATAAAAACTTCCTGCTACACCAGGGCTCAAAAAATGGCAGCAGTGGATGCTTTGAAAAAAGGCGAAAGGACAAGGAAAGTTGCTCAGGAATTTGGAATTCCACCAGCAACTCTGTATAGAGAAAAGGTCAAGCTGGTCCAAAAAGGAGCTCTTCCGAAGGATGCGATCAAAAAGCGACCGCTGGAGGAAGTTTTGGACAGGCAAATCAGAGTGCAACAGGCAGTTGCAGCTTGCAAGGAAGGCAAAATGTCACAGTCGTCTGCAGCATCACACTTTGATGTTCCCAAAACCACAATCTGGAGGCACCTCCGAACAGTTACTGAAGCACCTAAAGTTGATGTGGACGGTTCTTCAATGTCCGTCAGCAGCTCGCCAAAGGATAGTGACGTTGACTATCACACTTTTGTGATTGAAGGTACAAATCTGAAGCTGATTAGTGAGGACGACACAATGTCGATGGGACCATCGCACTACATTGTGTTGTCGGGAAATGAGACAGACAGCTTGCCAGGAAGCCTGCAGGTCATGCTTCCTCAGaATGATGAGGGCAGTGTAGTCTGCGAAGTAGAGGAATTGACTGAGGAGGTTGAAATGGATGAGACGATTAACGAAGCTGGTGGGAAGGCCTAA
- Protein Sequence
- MLAVNFHCAIIPKIYHTSWHLCVDSKASKQNTKNANKDEENEEQIYDCRVFLPNFSQTFLRNLRLIIVMENIVLEVTSNPNTAEVEEKLVWKSYATDISFFFSDFMKGCELVDTTLVAGGEKIRVHKMVLSATSSFLKKVLMEVDTPEPCIILPSEVKIEELKLLVDFIYRGEIRFMMSQLPSLSKLAQMLGIPGLPGFTEVFNNSNEEKDPDKVTWIVDETQEVEVFDDDEIEETSSRTVSPEIKDSLLEEEQKDSVPRTGPPGKRCRAPSSISYSQSDIDEGFRLLQSGKSIGQASRMTGVPRTTLYNKAKMSGVIAMQDKTKNYTEEQMDRAIKAVINGQSLNRAAEFYGVTKTVLWRRSKGLKPDSSLKIKTSCYTRAQKMAAVDALKKGERTRKVAQEFGIPPATLYREKVKLVQKGALPKDAIKKRPLEEVLDRQIRVQQAVAACKEGKMSQSSAASHFDVPKTTIWRHLRTVTEAPKVDVDGSSMSVSSSPKDSDVDYHTFVIEGTNLKLISEDDTMSMGPSHYIVLSGNETDSLPGSLQVMLPQNDEGSVVCEVEELTEEVEMDETINEAGGKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01046434;
- 90% Identity
- iTF_01046434;
- 80% Identity
- iTF_01046434;