Basic Information

Insect: Neoceratitis asiatica
Gene Symbol: ush
Assembly: GCA_030068015.2
Location: CM061524.1:43767520-43777625[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.013 0.9 10.4 1.2 1 21 281 301 281 306 0.91

2 9 0.00039 0.027 15.2 0.8 1 23 361 383 361 383 0.98

3 9 0.076 5.2 8.0 0.8 2 20 414 432 414 434 0.92

4 9 0.068 4.7 8.1 2.9 2 21 867 886 866 887 0.93

5 9 0.013 0.87 10.4 0.0 3 21 931 949 929 950 0.91

6 9 1.8 1.3e+02 3.6 0.1 1 23 1035 1057 1035 1057 0.78

7 9 0.02 1.4 9.8 1.3 1 23 1063 1085 1063 1085 0.99

8 9 0.0013 0.092 13.5 0.7 1 23 1157 1180 1157 1180 0.96

9 9 0.49 34 5.4 0.5 2 20 1314 1332 1313 1334 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.013	0.9	10.4	1.2	1	21	281	301	281	306	0.91
2	9	0.00039	0.027	15.2	0.8	1	23	361	383	361	383	0.98
3	9	0.076	5.2	8.0	0.8	2	20	414	432	414	434	0.92
4	9	0.068	4.7	8.1	2.9	2	21	867	886	866	887	0.93
5	9	0.013	0.87	10.4	0.0	3	21	931	949	929	950	0.91
6	9	1.8	1.3e+02	3.6	0.1	1	23	1035	1057	1035	1057	0.78
7	9	0.02	1.4	9.8	1.3	1	23	1063	1085	1063	1085	0.99
8	9	0.0013	0.092	13.5	0.7	1	23	1157	1180	1157	1180	0.96
9	9	0.49	34	5.4	0.5	2	20	1314	1332	1313	1334	0.91

Sequence Information

Coding Sequence: ATGAGTACTTTATGGTCTTTGGGAATTTCTTGTGAAATTGCGTCTACACAAATACTTTATCTTTGCGCTAGCAAGAGTGTGACTCTCTCCATGCCTCTAATCCATGCTGCTGTAGGCCCACCAAAAGCATACTATGTGcATTCCAAAGATCTAAGTCCCACCGACTTAGCAGAagatcaacaacaacatttagaACGTGAAGATTATCATCTTGAAGAGACTGACATTGAAATGGACGATGATACGATTACAAGAGACACAGGCGAAAATCGAATATTACCTATAAATCCACATCGAATATCGCCAAACTGTAGAGAAGAAAACGAAATGAGTCGTCCGCCTAGTGTGACAGCAGCAGCGAATAGCTCAAACTCTGCAGATGCTTTTCCCACTGAACATAAACTCGAATTGAATATAGTAGAGCCCGATGGAAAGATGGAAGAACAAACTGAAATAAGTATCGAATCAACTTCGCCGAACTTAAATAACACGGGTCCTGCCAGTAGAAGCAGCCCACATAAGGATGTACTGACGCCCGGTAATGAGACGCCACCAACAACGTCACCTACAAGTATATTACCTAAATTACGCTTAAATGCGCTTTTGGCTTCAGATCCGGCCTTGAAACCGGATGCAAAAGACCTTAAAGTCTTACACGaagaaacacaaaacaaaaatcgacTCGCGCAATTACCACCACCGCCGGCGCTTACCAAACAGGAAGACATAGATGCGATGATGAATGCGCCAGTGGTCGGTGTGGTGGAACCGGTGCTGAAAACAGCGGCAGCAGCACAAACACCAGCCAATGCCGCGGAAATTGCACCGCGTCTCaagttgtttgtatgtttgcctTGCGGCATACATTTCAGTTCACCATCAACGTTGGAGGCGCATCAGCTATACTATTGTTCGCATCGCAATAAGGATATGGAAGCTGACGCAGATTCACTCTCCAACGTAATAGCTGAGAAAAGTACCGGTATGAATCCAAACAACGCTAACTCAGCAAGTGGCGGTGTTGGCGCGAGTAACAGCAGTGGGGAACCTGCCGCGAAAGCCATTAAGACTGGAAAACAATATGCGTGTACACAATGCTCCTACAGCGCTGACAAGAAGGTTTCCCTCAATCGTCATATGCGTATGCATCAAACATCGCCAGCGCATAGCAGCAGTGCGCCACCATCGAACGGTGCAGTCACTTTGGACGACGGAAGTTCTAGTCAACAAACGGATCGTTACTGCAGCGATTGTGATATTAGATTCAATAATATAAAGACGTATCGTGCCCACAAGCTGCACTACTGCAGTTCGCGGCGTACCGAGGGCCGGCTAACGCCTAAGCTCGAGGTTAGCACAACAAATACTATTAAAGCGCCAATAGGCACCGCTGCCATCAGCCCACAGACGCGCACGAAGACACCGACACCAGCAATGGTCGCCGCTGCCGCAgccgcagctgctgctgctgccgcctcAATACAAGCTTCACCACCACAACCATTTCTGGCGTTGCCCACCAATCCCATACTGATAATTCCTTGCTCTTTGATACGTGCGGCAAGCTGGATACCCGGACCACTCTCTTCAGTGTCCCCATCCATTTCCAACCCTGATACCACATGTTATGTATTGGATAGTGGAAATTTAAAGCCGTTAGCGACAGCTCTGAATATGAGTAGCTTGAGCGCCAATGCTGCTGCAAGCGGTAATAATGCCGCTGCTAACGTCGCATCTGCTGCCAATCTAAGCAATCCACAAATGCCTACCGTTGATACACCGCCGGCTCGTCAACCTTCGCAACCGAGTAATGAAGCAATTAACGAAGCTCCTCCAGTCGAAAGGAGTGCTGGACGCGGTGCCGACAGAAGTGGCACGTCAACACCAAAGCGAAAAGAGGGCGCTCGTGAATCCGCACCATTGGACCTTTCTCTCCGTCGCTCGCCCATGTCCTACGTCAGTCTACAAAGGCAGCGTGCACACTCCGCCTCCTCGTACGCCGACTCCGAGCAACAACGCATGGATATGGAAACCCTGTTGGAAGCAAGCAAAGAAAATCTATCGATGGATGAAAGTGGCACTGTCACCCCAGAACAAATCGTTTGCGCCCCATCGCTACCGAATAGTCCCTCTATGAGTCCTTCACCGAAGCGACGCGCAATAAGCCCACGTAGTTCCGGCGCCGGCAGTACGTCCTCAATGTCACCACCAGTAAATGTGTCAACTGCCTCTTTTGTTTCTGCTGCCAGCAATATGCTCGATCTACCGTTGCGTTCAATGTTACCCACCGATCTGGCGGTGAAACTCTCCGAAAGCAATATAATGAATCCATTGTTagccaaacaaaattttgagcttGCATTAAAGCTCTCTGCTGTTGCGGCCGCTGCTGTAAACAATAGCTCGCCAGGGAATGTGGGCAATGGCTCAACACACGCCGAGTTGGCAGCTGCAGCTGTGGCTGCCGCTGCAGGAAAATCTTCGCTACTCGGTATGCCAGTTTTGGGTAGTACCGCCCCGACGGGTAACAATGCCAGTGTGGGTAGCGGTTCGAGCGCAGCAGTGCAACCCCAAATCTATGTCAAACAGGGTGTTTCCAAATGCAAGGAATGCAACATTGTCTTCTGTAAGTATGAAAACTATTTGGCACACAAACAGCACTACTGTTCAGCACGCAATCAAGAAAGCGGCGAAGGTAGTGAGGTAAAAGTGGCAAACACATCACCTATTGGCGTTGTTGGCGGCGCTGCGAGTGTGGAAGCATCCCCAGTTGCATATCAACAACTGATTTGTGCTGCCTGTGGCATTAAATACACTTCGCTGGATAATTTGCGTGCTCATCAAAACTACTATTGTCCCAAAGGAGGTGGCACAGCGGCAGGGGCAGCAGCCGTAGCCGCTGCAGCAGCAACTACCGATGCTGGGCAGTTGCCCTTAAACAAGGAAAAGTGTGGCAAATGCAAGACCATACACGAAATCGGCTTACCATGTCCACCACCGCCAACACTGCAGCAATCTCAAAGCGGAGCCCAGCACATGACTGATGCTGCCAATATGAATATTTCGGCATTATCAACAATTTCAGCACCCAATCAAAATGTCTATAAATGTCCCGTTTGTGATGTAGTGAGTCTGAGCGTTGCCGAGAGCCGAAAACATATGGAAACTCATGGCACAGTAAAAGCTTTCCGTTGCAGCATCTGCCGCTACAAGGGCAATACTTTACgTGGTATGCGCACACACATTCGCATGCATTTCGATAAGAAGGCGACCGATCTCAATGAGGAGCACTACATGTCTTGTATTCTCGAGGATGAGGGTTTGGAAATTCCTAGCATTGCTTCAACATTGAATCAGGAACATTTGGCTCAACAAATAGCCGCTGTACAGCATCAACAGCTCCAATTGCAGGCACAACAacggcagcaacagcaacaacaacaaaaacaacagcagcagcaacaaatatttaattgcgaTTTATGCAATTACTCATCATCCTATAAAGGCAATGTGCTCCGTCATATGAAATTGGTGCATCCTCATATTAATATTAGCTCACCTTCAATTTCACCAGAAGCTAACGACATGGATACCGCTGATTTGGCTGGTTTAAATGGCGAGAGTGGCACTTTCAGTATAAAAAGCGAACCACTCGATTCAGCACCAAACGCCAACTCCGCACAATTGATGGACAATAACAATACAACAATATTGGCAACCACCTTAACAGCGCCACCGCCGCCCCTAAACAGTCTTGCCGGCGAATCAATGCCACCACACATTAAAACGGAACCATTGGATATTGGTAGCGATACGCTACCAGCTGCTCCAACactactaccaccaccaccgcttAGTTCGCCAGCGATTGGACCACCACCACCCCTGAACGCTGCGACCGATGAGAATGCTACCGCGGCAGCGGCAAATCTAAAATACTGTCAAACCTGtgacatttcatttaattacatgAAAACCTATTTGGCACACAAACAATACTACTGCAAGAATAAATTGCGACGACCCGATGCGAATGAAAGTCCCAGTCCCAATGCTGGGCTCATGCCTGTCATGGCTGTGGCATCGCCAAATTCCTTGATGTTAATGCAAAAGAACAAAGAGAATTTGCAACAGGAAGCTGCCATTTGA
Protein Sequence: MSTLWSLGISCEIASTQILYLCASKSVTLSMPLIHAAVGPPKAYYVHSKDLSPTDLAEDQQQHLEREDYHLEETDIEMDDDTITRDTGENRILPINPHRISPNCREENEMSRPPSVTAAANSSNSADAFPTEHKLELNIVEPDGKMEEQTEISIESTSPNLNNTGPASRSSPHKDVLTPGNETPPTTSPTSILPKLRLNALLASDPALKPDAKDLKVLHEETQNKNRLAQLPPPPALTKQEDIDAMMNAPVVGVVEPVLKTAAAAQTPANAAEIAPRLKLFVCLPCGIHFSSPSTLEAHQLYYCSHRNKDMEADADSLSNVIAEKSTGMNPNNANSASGGVGASNSSGEPAAKAIKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAHSSSAPPSNGAVTLDDGSSSQQTDRYCSDCDIRFNNIKTYRAHKLHYCSSRRTEGRLTPKLEVSTTNTIKAPIGTAAISPQTRTKTPTPAMVAAAAAAAAAAAASIQASPPQPFLALPTNPILIIPCSLIRAASWIPGPLSSVSPSISNPDTTCYVLDSGNLKPLATALNMSSLSANAAASGNNAAANVASAANLSNPQMPTVDTPPARQPSQPSNEAINEAPPVERSAGRGADRSGTSTPKRKEGARESAPLDLSLRRSPMSYVSLQRQRAHSASSYADSEQQRMDMETLLEASKENLSMDESGTVTPEQIVCAPSLPNSPSMSPSPKRRAISPRSSGAGSTSSMSPPVNVSTASFVSAASNMLDLPLRSMLPTDLAVKLSESNIMNPLLAKQNFELALKLSAVAAAAVNNSSPGNVGNGSTHAELAAAAVAAAAGKSSLLGMPVLGSTAPTGNNASVGSGSSAAVQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQESGEGSEVKVANTSPIGVVGGAASVEASPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGTAAGAAAVAAAAATTDAGQLPLNKEKCGKCKTIHEIGLPCPPPPTLQQSQSGAQHMTDAANMNISALSTISAPNQNVYKCPVCDVVSLSVAESRKHMETHGTVKAFRCSICRYKGNTLRGMRTHIRMHFDKKATDLNEEHYMSCILEDEGLEIPSIASTLNQEHLAQQIAAVQHQQLQLQAQQRQQQQQQQKQQQQQQIFNCDLCNYSSSYKGNVLRHMKLVHPHINISSPSISPEANDMDTADLAGLNGESGTFSIKSEPLDSAPNANSAQLMDNNNTTILATTLTAPPPPLNSLAGESMPPHIKTEPLDIGSDTLPAAPTLLPPPPLSSPAIGPPPPLNAATDENATAAAANLKYCQTCDISFNYMKTYLAHKQYYCKNKLRRPDANESPSPNAGLMPVMAVASPNSLMLMQKNKENLQQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00191670;
90% Identity: iTF_00304145;
80% Identity: -