Nasi012116.1
Basic Information
- Insect
- Neoceratitis asiatica
- Gene Symbol
- -
- Assembly
- GCA_030068015.2
- Location
- CM061527.1:72073984-72102536[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0031 0.21 12.3 0.6 1 23 147 169 147 169 0.98 2 13 0.00071 0.049 14.3 1.0 2 23 450 471 449 471 0.97 3 13 0.23 16 6.5 2.3 1 23 528 551 528 551 0.95 4 13 0.43 30 5.6 1.8 3 23 599 619 597 619 0.96 5 13 0.02 1.4 9.8 6.2 3 23 868 888 867 888 0.97 6 13 0.07 4.8 8.1 1.7 1 23 894 917 894 917 0.96 7 13 0.15 10 7.0 1.2 1 23 967 990 967 990 0.96 8 13 4.4 3e+02 2.4 0.1 1 20 1247 1266 1247 1268 0.92 9 13 0.022 1.5 9.7 9.2 1 23 1326 1348 1326 1348 0.99 10 13 0.0013 0.088 13.6 3.7 1 23 1353 1375 1353 1375 0.97 11 13 0.0068 0.47 11.3 6.8 1 19 1381 1399 1381 1404 0.93 12 13 0.0006 0.041 14.6 0.1 2 19 1410 1429 1410 1433 0.93 13 13 3.9e-05 0.0027 18.3 3.8 1 23 1439 1462 1439 1462 0.98
Sequence Information
- Coding Sequence
- ATGGACGCTGAGACGGCAATGGAGGGAACGGCGCCAATGGATTACAGGCTGGTTTGTAGAACGTGCCTTGCTTCTGATGCAGAATTTTATCAGCTTGACTCACCGATATTTGTCGAGGATGATATTAGTGATGAAAAACCGGTCAGCTTTATGGATTGCTTACGTTATTGTATGCGTTTTAGTGATTACGATGAGtgtgaaaaattacaatttccaGTATACATATGCACAGAATGTTCGGCTGCCCTGCAGGTGTCTTACAATTTCATAAGGAACGCACTTGAAGCCCATGAAATTCTACGACGCAAACTAAGTGAATATCCCGACATGCAACGGAAAAGTCAAAAGATATTGCGCATAAATGGGTTGATAGAGGAGAGTGGACGCAACTGCGCGGGTAGGGAAGATGGCgtgGCGACGGAGGTGCCAAAAATGCGTTTTCGTTGTAAAATTTGCACAGCGAAAGTTGATACAAAAAAAGCTTTGAAGGAACATATAAAATTGCATCTAGaTATCATTTCTTATTGCTGTCAGTTGTGCAATTTCGAATGCAAGAAACGCACACTGCTTTTTGATCATTATAAATTGGCACATCATATGCAACCTACAAGAGAGCAATTAAAACCGAAAACCAAGCAACCTACTCAGGTGCCTATTAAGAAGGAAGAACAAATCGATTTCGAAGATTCAATTGCtcaagaaatggaaaaaattcataataatcaAATTAATGCAGAATATTTACATGGTACACAGAATGGGGTAcagcaccaccaacaacaacaagatatagatatgaaattatttctaacaCCGGCCAGTAGTACTGCCTCAGCAGCTGCAGCATATCTGGAAGCAGCAGCGGCTGCAACATCTGCGGATGATTCTACTGAATCGATTACAATGAAAACAGAGCATGGCGCTAGTGCATCAACGAACTTGCCACAATACGGCACGGAACAATTTAATATTGCCGCAAATGAGTTAAGTGTCGGCAATGAGTTTATTGTTATGGCAGATGGTACGGTAGAGGAAGTGATGGGCAATGGTGTTGTCATCGAATACATTAATGCCGCAGATGATGGCGTAACATTGGACAATGGTTTGGTGATGGATAATATTATGCAAGTACAACAAACAGGTGATATGAATCAAACTGTTACAATGGATATGGATGTGGATGATATGATTATCGAGGAATGCATCGGTAATGAACTAACCGGACATAATGTGTCCTCAATATCTATGGCTCCGGAGACAACAGTGCAAAcATTACAAAATATAGAAGATGAATTGCCGCCACCATCGATTATTACACCACAAAATGTACTTACCGCAAAGCGTATTAAGTGTAAAATTTGTGCTAGTAACTTTCAGACACAAGATCAACTGAAAACACATATGCTTACACATAATGAAATACCACATTTCTTTTGTGATCAATGCGCATTTTAcactttcttcaaaattgatttaaCACAACATTACAAAACAAAGCATAAATTGCAGCCCACACCGAAGCAATTACAGCCGAAAAATAAGGTCAAAGCTCATGATCAGGCGGGCGATCTGAAACATGTATATGCTTGCGACATGTGCCTCTTTGAAACGCGTATAAAGTCACATTTACGCCGTCACTATTTGAGTCAGCATCAAGAGGAGGCCACTGAGGTGCAACTGAGGCCAacaattgATGAATCAGTTGCTTTAACACAACCGGAAGACACACCATCCGATTCTCCACCCAAACAGCGTGGAAAAGTATTGCGTCCCGATTATCCGAAAGGTATAAATTGcagaaaatgttcaaaaatattttattggcgTGAGAAATTAAAAGATCATTATCGACAACATGGTTTGGAAGACAGCAAAGGCATAAATGTAACTGCCAGCGACACAATGATGACCAATACTGTGGTGGATAATACAGCGGCTGGTACgagtttattaaaacaaaatacatttcaatATCAATTGCCGCCAGTACATGATGGCAATAATATGAATATCATGATCAATACAAACATCGCTCACAATCACTATGATAGCAATGTCAACGCCCATGATCCTAGTGTTATAGATGCACAGGCGATTGTCGATGCTGCGGTAGCGGAGGCACAAGCTGCCGGTATACAAATGAATATGCAAATGAATGCACCGGCACCGGATATCATTATGGATATaccagtagcaacaacaatttctaATACAGCAGTAGCCACATGCACAACAGCAGTGGTTGGTGCTAACAATCCCAATGgtatgcagcagcagcaacaacaacagcagccagTAGCTGTAATGGCGGGTTATGCGTGCCAGCAAATACCATCGGATGCCATACCACAAGTTGTCGAAACCGAAACAACAATTGATAATAGcgaattggattttatttttaatgatgcGCTCTTTGAAGATTTCGATGAAGATGAAAATGAGGAAGAGAATGAAGAAGATGGTGGTACAGATTTTCAAGATTTAATGCTTACCAGCGATGATGATTTCGATGATATGTTAGAGGATGAACATCAGAAGCAACGCGAAACAGTCGGCGAGGTTTCGACAAATACGAACACAAACATATATCAACCGTTTTGTGTGCATTgcaataggaaatttttcagtCAATATCATTTTGAAAATCATATGTTCGTACATCGTGGTTTGGCACCTTATCACTGCGAAAtgtgtacaaatttatataatacaaaGCGTGCATTAATACGTCACTATCGCGCTgtgcataaaaaaattcctaCAAGGGATATGATACAAGCCAAGGGTGATAAAGCGGTCACCCTGATGTGTGCTAAATGTCCATTCGAATCGGTCGATTTAACCGTTATGCAGATACATTTAAACACCGTGCATGGCCTAGTCGATGAATTGCCCTTTGAGTGTCCGCGTTGCATACGATCATGCGCAACGCGTGAACGCCTCATAAGGCATTTGGAGCGTAGTCATTCGGTGGCGACTATAATACAACCGCACCGTACCACAAATAATGTTATGCCTAATCAACtgccacagcagcagcagcaacaacaacaacaaccgtttaTAGCTATAAAAGATACAGctaccgcaacaacaacaacaacaacagcaatagcaactgCTGCAACACATCCATCCGCATCCCccttagcagcagcagcaacagcaacattttCAGCGGCGGCAGCGGCGACGACGAGTTCAAGTTGCGGCCGAGGCATAAATACGCAATCATATCAattcaactgcaacaacaacaacaacaaccacgttgatgatgatggtgatgatgatgagggGAAAGGTGGTGAAGATGATGATAACGTTGATGCCGTTGATAATGGTGTTGGTGTGCGTGTTGTTGGTGGTGATGGTGCTGGCATGGAGGTTgataatattaacaacaacaacaacaacaacaacaacaacaacaatatacagCATACATTACATACAGCCACAAACGAAATTTCGCCACTCTCCAAACTAATCGCCGATATGGAGCATGATGAGGACTCACAAGTAGACACTGCAATTGTACCCACAACCATGTTTACCCAAACAGCTGCCAGTACACAACTGAAAAAGAAAGGCCAATGCATGAAAAGGCCAACAACGAAATCAGCAGCTATGCCAAAAACAAATAGGAAAAGTATGTCAACTGGTGTGGTCAATAGCACAATCACAGCCGATATGTACAATCAATTGAATGAAAACAATGAATTATTCGATGAATACGCCTGTGGCATGTGTTCACAAAGTTGGCGTACCGCAGCTGAGCTGCACGCACACGAATGCATACGTTTGACGTGTGTTGGTGGTAATAGTGGTAGTGGCAATAGGGAAGCTGTTGATGAGGAGGAGAGTGGCaacaccaccgccaccaccaccatcaatGCAGCCAGCACAGCTGCAAATACCAAAGGTGTGGAAAATGTTGGCCTCATAACATCGGAACGTTCGTTGTATCTCTTTAAATGTTACATTTGCCATTGCAATTACAAGTCCAGTGAATTACTAAGACATCACATTAAACGGCATACGGCACGCATTTTTCGCTGCAGCCACTGTCCGAAGACATATATCAATCGGAGTGAGTTGAAATTTCATCAACTCAGTCATACCGGCGAGAAGCCGCACAAGTGTGAAATGTGCCCGAAACAATTTCGTTATCCACACCATTTGAAGCGGCATTGCGATGTCGTGCATTTGGGTAAACGTGCACGCTGTCCCGTGGAGGGTTGCGGGCGTACATTTACGACGCAAGCACAATTGAAGATACACGCTTGGATTCATGATGGCAATGAGCCGTACCGTTGCAAATACTGTAGGCAGTCGTTCAAGAAACGCGAGTCCTTACGCAAGCACGCGCGTCGTGCGCATCAATGCGATCTAACCGAGGAGGAGATCGCTGAAATTTATCGTCAAAATGTTGGACACACCAATCCACACGACTTTACGGTATCACTCTCAAATGGACGCATGCTACGACGTTCCGAGCTAGAACAAATCGCTCAACAGCAACACACGCTGGACACACTGGACGAGAGTTTAGCTACAGTAACGGCAACAGCAGCAAGCGATGCGGCAAACGCTGCTATAGTACATATACAAACGGCGGAAATCGATACAAACAATAGTCTTTCGCCGCTACTCGCCGCCAATAGTCACAACAATATGAATATTCAACAGCTTGTGATGGGTGTGGCAGTCggagaggaggaggaggaggaggggGATGAAACAACCGTTGTAACGCATATATCGCAAACTAGCAACTCTTTGGCGACGCATGAGGAAaccatacatacgtatatgttgCCCGGCATGGAGGAGCATGGCCAATTGCCACATTTCAAACTGGAGAATTCCGCGGACACCTGTACTATTTCCATGCCAACGGATTTGCCGTATCCACAACCCGTCTTTATAACCGAAAAAAGACTATTCCGGCCAATTACTAAGGTAACCGAGTTGCAAGAGGGCGAGGAGCTCATATTGCATTGCGCTGGTAGGAGTAATGTCGTGGTAGCTCTCAGACAACAAACAGTTACGCTACAATGTCGCAATGGCAAATTCTACGACCAAGTAAAGGGCAAACAACGAAATCTTAAAAACCTAAAATGTTCGCGCGTACCGACTTCGGAGTTACTGGTAACAGGCACCGCTTGTGCCGGTGGCGCTGGTGTCTTATACGAAGTGGGCTTCCCGGTAAACGATGATTTCCATAGCGTTTTTACGATTTGCTACGACAGTGAAAACGAACACACCATCTACTCACGCAGTCTCGTCAATGGTGCCGCACTGAGTTTCAAAATAAACGACAGCACACGTCGCTCATTCAGAGCTGATGGTACGCGTTTCTCCTCCACGGGAATGAATAACTTCTACGTGCATTCAAACCAGAGGGCGCTTTTCGTCGCCTATTTTGGTCGTAGACAAACGTACGTAACCTCCCATAGCTTCCTCGCACGTGGTCATCTGGCGCCCGATGgtgatttcattttcaattatgaACAATTGGCCACCTACTATTACACCAATTGCGCGCCCGAATGGCAGGCGGTGAATGCTGGCAACTGGTTTCGTGTGGAGAATGCTGTTCGCAAGCTTGCCTCTGAGCTGGGCTCCGATTTACTCACATTCACCAGCACTTTGGGTGTGTTGGAGTTGGCCAATCCGCAGAAGAatgaattgataaaaatatatttggatcAAATCGAATTACTTCCAGCACCCGAAtggtattataaaattataatgcaTCCAAGTCTACCCGCTGACATCGTCTTCATTACGCGTAATAATCCATTTGAAAATGTTGGTGCGgaagttgaattttgtacgaATGTTTGTGACAGGTACAATTTGGGTGCGAGCCAGTATAAGGACTCAAGTCGTGGTTACACATTCTGTTGCGACACCTGCACTATTTCCATGCCAACGGATTTGCCATATCCACAACCCGTCTTTATAACGGAACAAGGACTATTCCGTCCAATTAATAAGGTAACCGAGTTGCAAGAGGGCGAGGAGCTCATATTGCATTGCGCTGGTAAGAGTAATGTCGTGGAAGCTTTCAGACAACAAACAGTTACGCTACAATGTCGCAATGGCAAATTCTACGATCAAGAAACGGGCGAACCACTAGAACTTAGAGAACTTAAATGTTCGCGCATACCGACCTCTGAGTTGCTGGTAACAGACACCGCTTGTGCCGGTGGCGCTGGTGTCTTATACGAAGTGGGCTTCCCGGTAAACGATGATTTCCATAGCGTTTTTACAATTTGCTACGACAGTGAAAACGAATACACCATCTACTCACGCAGTCTCGTCAATGGTGCCGCACTGAGTTTCAAAATAAACGACAGCACACGTCGCTCATTCAGAGCTGATGGTCTGCGTTTCTCCACCTCGGCCACGAATAGCTTCTATGTGAATAGAAACCAGAAGGCACGTTTCCTCTCCTATTTTGGTCCTAAACAAACGTACGTAAGCACCCATAGCTTCCTCGCACGTGGTCATCTGGCGCCCGATGCTGATTTCATTTTCAGTTATGAACAATTGGCCACCTACTATTACGCCAATTGCGCGCCCGAATGGCAGGCGGTGAATGCTGGCAACTGGTTACGTGTGGAGAATGCTGTTCGCAAGCTTGCCTCTGAGCTGGGCTCCGATTTACTCACATACACCAGCACTTTGGGTGTGTTGGAGTTGGCCAATCCGAAGAATAATGAATTGACGAAAATCTATTTGGACAAAACCGAATTGATTCCAGCACCCGAATGgtattataaaattgtaatgCATCCAAGTCTACCCGCTGACATCGTCTTCATTTCGCGTAATAATCCATTTGAAGATGTTGGTAAGGAGGTTGAGTTTTGTACGAATGTTTGTGAGAAGTACAAGTTGGATGTGAGCCAGTATGAGGACTCAAGTCGTGGTTACACATTCTGTTgtgagttgaatgatttctggGCAAACGCTATGAATGACGATAAACCCAATTTCGATCTCCCAGATGGCTGGAGTTATAAGAATTAA
- Protein Sequence
- MDAETAMEGTAPMDYRLVCRTCLASDAEFYQLDSPIFVEDDISDEKPVSFMDCLRYCMRFSDYDECEKLQFPVYICTECSAALQVSYNFIRNALEAHEILRRKLSEYPDMQRKSQKILRINGLIEESGRNCAGREDGVATEVPKMRFRCKICTAKVDTKKALKEHIKLHLDIISYCCQLCNFECKKRTLLFDHYKLAHHMQPTREQLKPKTKQPTQVPIKKEEQIDFEDSIAQEMEKIHNNQINAEYLHGTQNGVQHHQQQQDIDMKLFLTPASSTASAAAAYLEAAAAATSADDSTESITMKTEHGASASTNLPQYGTEQFNIAANELSVGNEFIVMADGTVEEVMGNGVVIEYINAADDGVTLDNGLVMDNIMQVQQTGDMNQTVTMDMDVDDMIIEECIGNELTGHNVSSISMAPETTVQTLQNIEDELPPPSIITPQNVLTAKRIKCKICASNFQTQDQLKTHMLTHNEIPHFFCDQCAFYTFFKIDLTQHYKTKHKLQPTPKQLQPKNKVKAHDQAGDLKHVYACDMCLFETRIKSHLRRHYLSQHQEEATEVQLRPTIDESVALTQPEDTPSDSPPKQRGKVLRPDYPKGINCRKCSKIFYWREKLKDHYRQHGLEDSKGINVTASDTMMTNTVVDNTAAGTSLLKQNTFQYQLPPVHDGNNMNIMINTNIAHNHYDSNVNAHDPSVIDAQAIVDAAVAEAQAAGIQMNMQMNAPAPDIIMDIPVATTISNTAVATCTTAVVGANNPNGMQQQQQQQQPVAVMAGYACQQIPSDAIPQVVETETTIDNSELDFIFNDALFEDFDEDENEEENEEDGGTDFQDLMLTSDDDFDDMLEDEHQKQRETVGEVSTNTNTNIYQPFCVHCNRKFFSQYHFENHMFVHRGLAPYHCEMCTNLYNTKRALIRHYRAVHKKIPTRDMIQAKGDKAVTLMCAKCPFESVDLTVMQIHLNTVHGLVDELPFECPRCIRSCATRERLIRHLERSHSVATIIQPHRTTNNVMPNQLPQQQQQQQQQPFIAIKDTATATTTTTTAIATAATHPSASPLAAAATATFSAAAAATTSSSCGRGINTQSYQFNCNNNNNNHVDDDGDDDEGKGGEDDDNVDAVDNGVGVRVVGGDGAGMEVDNINNNNNNNNNNNNIQHTLHTATNEISPLSKLIADMEHDEDSQVDTAIVPTTMFTQTAASTQLKKKGQCMKRPTTKSAAMPKTNRKSMSTGVVNSTITADMYNQLNENNELFDEYACGMCSQSWRTAAELHAHECIRLTCVGGNSGSGNREAVDEEESGNTTATTTINAASTAANTKGVENVGLITSERSLYLFKCYICHCNYKSSELLRHHIKRHTARIFRCSHCPKTYINRSELKFHQLSHTGEKPHKCEMCPKQFRYPHHLKRHCDVVHLGKRARCPVEGCGRTFTTQAQLKIHAWIHDGNEPYRCKYCRQSFKKRESLRKHARRAHQCDLTEEEIAEIYRQNVGHTNPHDFTVSLSNGRMLRRSELEQIAQQQHTLDTLDESLATVTATAASDAANAAIVHIQTAEIDTNNSLSPLLAANSHNNMNIQQLVMGVAVGEEEEEEGDETTVVTHISQTSNSLATHEETIHTYMLPGMEEHGQLPHFKLENSADTCTISMPTDLPYPQPVFITEKRLFRPITKVTELQEGEELILHCAGRSNVVVALRQQTVTLQCRNGKFYDQVKGKQRNLKNLKCSRVPTSELLVTGTACAGGAGVLYEVGFPVNDDFHSVFTICYDSENEHTIYSRSLVNGAALSFKINDSTRRSFRADGTRFSSTGMNNFYVHSNQRALFVAYFGRRQTYVTSHSFLARGHLAPDGDFIFNYEQLATYYYTNCAPEWQAVNAGNWFRVENAVRKLASELGSDLLTFTSTLGVLELANPQKNELIKIYLDQIELLPAPEWYYKIIMHPSLPADIVFITRNNPFENVGAEVEFCTNVCDRYNLGASQYKDSSRGYTFCCDTCTISMPTDLPYPQPVFITEQGLFRPINKVTELQEGEELILHCAGKSNVVEAFRQQTVTLQCRNGKFYDQETGEPLELRELKCSRIPTSELLVTDTACAGGAGVLYEVGFPVNDDFHSVFTICYDSENEYTIYSRSLVNGAALSFKINDSTRRSFRADGLRFSTSATNSFYVNRNQKARFLSYFGPKQTYVSTHSFLARGHLAPDADFIFSYEQLATYYYANCAPEWQAVNAGNWLRVENAVRKLASELGSDLLTYTSTLGVLELANPKNNELTKIYLDKTELIPAPEWYYKIVMHPSLPADIVFISRNNPFEDVGKEVEFCTNVCEKYKLDVSQYEDSSRGYTFCCELNDFWANAMNDDKPNFDLPDGWSYKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -