Basic Information

Insect: Neoceratitis asiatica
Gene Symbol: -
Assembly: GCA_030068015.2
Location: CM061524.1:2513977-2517227[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 7.1e-06 0.00049 20.6 1.0 1 23 480 502 480 502 0.98

2 7 1.3e-05 0.00086 19.9 2.5 1 23 508 530 508 530 0.97

3 7 1.5e-05 0.001 19.6 1.6 1 23 707 729 707 729 0.97

4 7 2.5e-05 0.0017 18.9 2.8 1 23 735 757 735 757 0.98

5 7 0.19 13 6.7 3.9 1 23 763 785 763 785 0.99

6 7 0.019 1.3 9.8 2.5 2 23 841 862 840 862 0.96

7 7 0.00038 0.026 15.2 0.1 1 19 869 887 869 889 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	7.1e-06	0.00049	20.6	1.0	1	23	480	502	480	502	0.98
2	7	1.3e-05	0.00086	19.9	2.5	1	23	508	530	508	530	0.97
3	7	1.5e-05	0.001	19.6	1.6	1	23	707	729	707	729	0.97
4	7	2.5e-05	0.0017	18.9	2.8	1	23	735	757	735	757	0.98
5	7	0.19	13	6.7	3.9	1	23	763	785	763	785	0.99
6	7	0.019	1.3	9.8	2.5	2	23	841	862	840	862	0.96
7	7	0.00038	0.026	15.2	0.1	1	19	869	887	869	889	0.95

Sequence Information

Coding Sequence: ATGGAAATTCTAATGAAGTTAAAATGTTCACCGTCTGTCCCGCCGCACGGTAATAACAATACCGCCCATTCCACCCTGAAAGTCGTTGACCATCATCATCAACTTACTCAACAACATGCACCTTTAGCTGCAGCGGGCACAGCACCACTTGTTCGTTTGCCATCTTCCcaagcaaatattaattatagttCTTCTCCATCATTACCACCGATCTTACTTCAGACTGTACCTCGTATGCCAGCAACAAGACCATGCTTGAATTATTCGAAGCCACCTCAGTGCTGTAATATTGCTGCCGCACAACAAGGAGCTGAATTATTTGAACCAATCTGGGATCAACAAGGGCGACGTGGTCTTCCATATGAAATCTCAATGCAACGGACACCAAATTGTTGCGCAAATATTActggaataaatttatttgaaacaccGGCGTGTTGCAGTGGCACCTGCCCACCGCCACCGTATGGTGGTACACCGCCGCCACCTGCTACACATTCGATTGCTGCGGCGCCCCTACCTCAACCACCGCCACTACAACAGGCACCCCCACCCTTAGCTTATCCCACTGCTACTTCAGATACCATGTTGGAAAATAGTTCAAATACGGATGCAAGTACACACTACGAGTATCACGAACctgaggaaaattttatttccatagaagataataaaatcaaaagtctCCTTATGAAAATTGGACGAGAATGTGCTTTGGAGAGgaagaaagaaaagagaagaacaaCTGAAAACTCAACTTTATCTACAGGAAAAACGAAGGAGCAACAAGCATTGTTTGAGATTATTGATTTAGACGATGAAGATGATCGAGAAGAGTTGCGTCAAATAAGGAATCAAGCGGAGAAGGCCAACCTCAAATCCGCCGCCGCACAAACTAATATTCAGCGTGTGAATCCATCGCTGGCGCCCTTGTCTACTGCAGGGCATGAAAACAGTCGGCCAAGACTAAAATCTCCAAGTATAAGTCTCATTCCGAAAATCCCGTCAACACACAAAAAGAACAAAGGCCAAACACTTAAACCGAGCAAAGCAGATCCCTCCAAGGAACGTATAATTGCACACATTGAACTGTCTGATAGTAGTGACTCTGAGACAGAATATGTTAAGGCAATAGATGATACAGCGAATCAAAGAAGCGAAGTGGCAGTCAATGTGTTTAATAATAGTGAAGATGATGAAGACGACGAGCTGTCTTTCGCAGCTGCAGCGGTGAGCTGTGAACTGGAGTGTGACGATGACGAAAACGACGACAAAGCAAATGCGAGCGAAATTGGCAGGTCAGAGGCAAACAATTCAAGCAGTGAAATAGTCATTCTCAATTCAGATGATGAAAATGTCGAGTTTGTAGATGAACAGGATAAAAGATTAGAACTGCGTTGGGAAGATTTGGTTCGACCTGAAAAGGGACGACAATTTTTCGAATGTTATTTGTGTGGCAAGAAGGTGCAGTCTAGCTACAATTTAAGAAGACACATGATGATACATACAGGTGAACGTCCATTCGCTTGCGATATGTGCGATCGGCGTTTTCGCGAGTTCAGTGATCTGAAGAAACATCGTCGCCGACACTCGAACGAGCCGAACTTTGTGTGTATGGTGTGCCGAGTAAAGCCACCGATGATGCAAGATCCAACCCGTTGCAATGACTGTGATTCGAAGACGATTGCAacgacagcagcaacaatacgTCCACAATACTCCGCATCACCGCCCTCCTCACCAGAAAAACCGCAAACACCGTCAACACCTACACCGCCGCCACAACTTCCGCCACTTATTGCAAAGCCACAGCTGCCAACTGAACGTATCCGTGACTTTgcggtaacaacaacaacagcaacagctacGATTACTACATTGAGGAATAATagtaatacaataataacattaaagGCCGTACCACACCCTCCACCTGATGCCGCTTCCCCCAAGCGACCGAAATCTACGACTTTACTACAATCAGACATACCGTCTTTGGTGCCGATAAATGCGCCCATCACCATTAGTAATAAGAGTGGCACACAGTCGTTGCTCGACAATATACCCGCTGTACACAGACCGAACTACAATCAGCTGGGTGTTATGACACGTAAAGAATTTCCATGTCCACTATGCCAGCGCGCCTTCGGCACACGTCACAATCTAAAGCGTCACTTCATGATACATACCGGCGAAAAGCCATTTTCCTGTAGTAAATGTCGCAAACCATTTCGGGAATACTCGACGTTGAAAAAGCACATGGTGACACATCAACGAGAGCGTTATTATAAATGTTTGCATTGTCCTAGTAAATATCGTGATTATTTGGAATATAGCGAACACAAGAGGACGCACGTCAATGAGGATGATGAGGTCGATGATGAtgaggaaataaattttgatccACAGCAACTCAGCTCCTCCAGCAGCACGTCAAGTCCACAGAAAAGGGCTAGAACGCGCTACGACAGTAGCTATGATTCGAACGAAGACGACTCGTCAACGGAAGGCTGTTGGCTAGAATGTTGTGAGTGTAAACAACGTTTCACAGAAATCGAATCCTATACCCGGCATTTGAAGGAGCACGATCCATCGGTGTATTCCTATGAATGCTATATTTGTAAAAAGACATTTGAGCAGCGTGACGAATTGGTCGAACATGTGGGCGCTTGCAAAGAAGAATTGCGCGAGACGGCGTTGCAACGAGCTAACTGTTTCAAGTAG
Protein Sequence: MEILMKLKCSPSVPPHGNNNTAHSTLKVVDHHHQLTQQHAPLAAAGTAPLVRLPSSQANINYSSSPSLPPILLQTVPRMPATRPCLNYSKPPQCCNIAAAQQGAELFEPIWDQQGRRGLPYEISMQRTPNCCANITGINLFETPACCSGTCPPPPYGGTPPPPATHSIAAAPLPQPPPLQQAPPPLAYPTATSDTMLENSSNTDASTHYEYHEPEENFISIEDNKIKSLLMKIGRECALERKKEKRRTTENSTLSTGKTKEQQALFEIIDLDDEDDREELRQIRNQAEKANLKSAAAQTNIQRVNPSLAPLSTAGHENSRPRLKSPSISLIPKIPSTHKKNKGQTLKPSKADPSKERIIAHIELSDSSDSETEYVKAIDDTANQRSEVAVNVFNNSEDDEDDELSFAAAAVSCELECDDDENDDKANASEIGRSEANNSSSEIVILNSDDENVEFVDEQDKRLELRWEDLVRPEKGRQFFECYLCGKKVQSSYNLRRHMMIHTGERPFACDMCDRRFREFSDLKKHRRRHSNEPNFVCMVCRVKPPMMQDPTRCNDCDSKTIATTAATIRPQYSASPPSSPEKPQTPSTPTPPPQLPPLIAKPQLPTERIRDFAVTTTTATATITTLRNNSNTIITLKAVPHPPPDAASPKRPKSTTLLQSDIPSLVPINAPITISNKSGTQSLLDNIPAVHRPNYNQLGVMTRKEFPCPLCQRAFGTRHNLKRHFMIHTGEKPFSCSKCRKPFREYSTLKKHMVTHQRERYYKCLHCPSKYRDYLEYSEHKRTHVNEDDEVDDDEEINFDPQQLSSSSSTSSPQKRARTRYDSSYDSNEDDSSTEGCWLECCECKQRFTEIESYTRHLKEHDPSVYSYECYICKKTFEQRDELVEHVGACKEELRETALQRANCFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00304069;
90% Identity: -
80% Identity: -