Basic Information

Insect: Neoceratitis asiatica
Gene Symbol: -
Assembly: GCA_030068015.2
Location: CM061525.1:80663959-80667627[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.017 1.1 10.0 2.5 1 23 441 463 441 463 0.97

2 7 7.2e-07 5e-05 23.8 3.3 1 23 469 491 469 491 0.99

3 7 0.00012 0.008 16.8 4.4 1 23 497 519 497 519 0.98

4 7 0.0007 0.048 14.4 3.5 1 20 525 544 525 547 0.95

5 7 0.0026 0.18 12.6 3.8 1 23 553 576 553 576 0.98

6 7 1.8e-05 0.0013 19.3 1.6 3 23 584 604 583 604 0.96

7 7 9.3e-06 0.00064 20.3 1.2 1 23 610 632 610 632 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.017	1.1	10.0	2.5	1	23	441	463	441	463	0.97
2	7	7.2e-07	5e-05	23.8	3.3	1	23	469	491	469	491	0.99
3	7	0.00012	0.008	16.8	4.4	1	23	497	519	497	519	0.98
4	7	0.0007	0.048	14.4	3.5	1	20	525	544	525	547	0.95
5	7	0.0026	0.18	12.6	3.8	1	23	553	576	553	576	0.98
6	7	1.8e-05	0.0013	19.3	1.6	3	23	584	604	583	604	0.96
7	7	9.3e-06	0.00064	20.3	1.2	1	23	610	632	610	632	0.99

Sequence Information

Coding Sequence: ATGGCTGATGAGTTTGGAACAAAGTCttattggaatttaaaaaaatgtggggAAATTACAACATTGCTCTCAGTGGGAAAGGAAAAGTTCTTCCTGAATTGCGAATTTTGTGATTACTCTTCTCTGGATTTACACGAATTCATAAATCATATATGCCATGAtcatatattgaatttcacaGATTTGCCCTTCAGGCAAAATCTCCCTGGACCAAAAAATCCCTTGGAAAACATGGAACTAGAAGAATTCCAGATAAATCTCATTGAGGAAAACGTTTATGAGAGTTCTGCTctaaaagattttgaaaaaatcgagtTACAACCGAACTCGGAAGAAATGGTACTCGaagaatttcagaaaattaacGTTGAGGAAATCGATGACAAGAGTTCTgttttaaaagattttgaaCAAGTCGAAGTACAGGTGAACTCTAAGGAAATGGAATCTACCCTTGATTTGAAGGAAGAAGATGTTTTCAGTGAATATATTAAGAAAGAAAACGAGcGCCCAAACGATACGAAACTCAATTGGAATATTCAGAAAGGATGTGAGACCGCCActgattcaaatattttcgctaatgaattaaaaacatCCCACTGTAATGATATTACTATTAAAGAGGAGGTCCCACTTGAGCAAAGATTTACTCTTGAGCTAATTGAATTGTATCGTTCGCTACCAGCTTTatggaataagaaaaataatgatttcaaGGACCGAGAAACTAGAAAcatacaatacaaaattttgctagaaaaatataaagaaatgtatCCGGATGCTATAAAAGATGATTTAAAAAGAACTATAAACAAACTTCGTGCAAATTATCTGAGAGAATCAAAGCGTCCTTATTCGAAGAGGAAACTCTACTATTTTAGTGCATTGAGCTTTGTCTATAATAATTCCCAAAGCCCAACCGAAACTGAAAAGCAGAACTACCAGGATGATgaggGGGAGCTGAGACGTAGAAAAACGAAGTTCTTCCCACCAAaaagcattttgaatgaagcacAATGTTTGATGCTGGCCGATATGTATAAAGAATTCCCAAGCCTTTGGAATGAAACTGATATAACATATAGATTTATGAATAGACGACAAGAAGCGTTCGATAAGATGTGTAAAAAGCTCAATGAGAAGTCTGGACTAAGCTTGacacaagaaaatttaaaaaaggaaattagtcGTTTACGAAAAATATGTGCTAATGAGAAAAAAGAACAACTGCTATGTAAACGAGAAAAGAGTGTTTATGAACCAACCTGTAGATTTTATGATCACATTTCATATCTCACTACCAGTGTTCATCCTTTCGAATGTACGTTATGTGGCAAAATATATCAAACTTCTGATAAATGCAAAGAGCACATGTCATTGCATGATGGCTCCCGGCCCTTCAAGTGTCATATGTGTGATCGAGGCTTTCAATCGTCTTCTAATTTAACTGTCCACTTACGTAGGCATGTTCAAGACTATACCTATAATTGTGATGTATGCAATAAACAATGCGCAACGTCTACAGAGTTACATACGCATATGCGTTCTCATTCGGACAAAAAGGAGTATGTTTGTGAAATATGTGGTAAGGAGTATCGtacaatgtcaaaatttaatattcatatgCATTGTCACGATGAACAGCCTCAGTTTAGGTGTGAAACTTGCAATAGGATGTTCCATACAAAAGAATCAAAAAGAGTACATGTTAAGACTGTTCATTTAAATATCCGAGACAAAATATGTACTACATGTAATAAAGCttttaaaagtgcaaaaaacctGCGGCAACACACACAGCTTCATGCCGAAGAGAAGAAATATCAATGTAAGCTTTGTGGTAAACGATTTGCGCAATGCGCCGGTCTAAGTGTACATGTGAAATCACATGGCACAAGGCTATCTGATATCGCTTCTAAAAGCATTGATTTACCAAAAGACGATGATAGTGTATAA
Protein Sequence: MADEFGTKSYWNLKKCGEITTLLSVGKEKFFLNCEFCDYSSLDLHEFINHICHDHILNFTDLPFRQNLPGPKNPLENMELEEFQINLIEENVYESSALKDFEKIELQPNSEEMVLEEFQKINVEEIDDKSSVLKDFEQVEVQVNSKEMESTLDLKEEDVFSEYIKKENERPNDTKLNWNIQKGCETATDSNIFANELKTSHCNDITIKEEVPLEQRFTLELIELYRSLPALWNKKNNDFKDRETRNIQYKILLEKYKEMYPDAIKDDLKRTINKLRANYLRESKRPYSKRKLYYFSALSFVYNNSQSPTETEKQNYQDDEGELRRRKTKFFPPKSILNEAQCLMLADMYKEFPSLWNETDITYRFMNRRQEAFDKMCKKLNEKSGLSLTQENLKKEISRLRKICANEKKEQLLCKREKSVYEPTCRFYDHISYLTTSVHPFECTLCGKIYQTSDKCKEHMSLHDGSRPFKCHMCDRGFQSSSNLTVHLRRHVQDYTYNCDVCNKQCATSTELHTHMRSHSDKKEYVCEICGKEYRTMSKFNIHMHCHDEQPQFRCETCNRMFHTKESKRVHVKTVHLNIRDKICTTCNKAFKSAKNLRQHTQLHAEEKKYQCKLCGKRFAQCAGLSVHVKSHGTRLSDIASKSIDLPKDDDSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -