Nasi009814.1
Basic Information
- Insect
- Neoceratitis asiatica
- Gene Symbol
- -
- Assembly
- GCA_030068015.2
- Location
- CM061527.1:9992946-9994925[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.1 7.2 7.5 0.8 2 23 259 281 258 281 0.94 2 9 2.2 1.5e+02 3.3 3.0 1 14 313 326 313 336 0.70 3 9 1.3e-05 0.00087 19.9 0.9 1 23 343 365 343 365 0.98 4 9 0.0006 0.041 14.6 2.4 2 23 374 396 373 396 0.95 5 9 6.6e-05 0.0046 17.6 0.2 3 23 404 424 403 424 0.97 6 9 0.00013 0.0093 16.6 0.4 2 23 433 455 432 455 0.97 7 9 2.1 1.4e+02 3.5 0.7 2 23 464 486 463 486 0.89 8 9 1.6e-06 0.00011 22.7 0.9 1 23 491 513 491 513 0.96 9 9 0.0014 0.094 13.4 6.6 1 23 519 542 519 542 0.96
Sequence Information
- Coding Sequence
- atgtttgataAATTGTCCTGTATATTGTGTTTGGAAAAAGCCAATACATCGGTTGACCAGATAAATATCGACTTAGAGGATACGCAATCAGTAAATGCTCGTGAGATAATTAAACATCACTTCAAGGAGGAGTTAATTATGTTGCCATTCctaataacaaaaatagtttGCTATCAATGCTGGGAACTGGTCCAAACGTTTCATGAGTTCTATGTGCGTGTACAAAACGCTCATATAGCCGCCACTAACACCTTGAAGTCTTTACAAGAGACAGAGATACCTGTaaccgaaataaaaattgagccTGATGCAGTAGACGAATTGGCTTCTCCCCCAAAACGTCGGAGAGGACGCCCGCGACGCCAAAAGGTGGACAAAAAATCAGAGGAGAGTGTACCGATCGGTTTCAAACAATGCACAGTTGGAATTGAGCCACTTTTGTTACCGTTTAACAGTAGTAATAGTGAAGAAACGAAAGATCtagatttcgaaaatttcgaaatcaaGAGTGAAGTAATGCCCAGCGAATTTATGGATGCTACTGACTGTATCCAACAATCCGATGTCGCAAATGAAACGAAAAGTGTAGTGCCTGATAGCTCTGCACAGAACAATGATGAATCTCTATTAGTTCCAAAGAAGAAAATAGTATGCAAGAAACGAGGACCAAAGCGTAAGCGGAGAGATTCAAAAGCAGAGGTAAAAAGAGATTATAATAAACTACGGCATAAAACATCAGATTATGACGACTATATTGCTCAACATTTTAAATTGACCTGTTTTCTGTGTCAAAAATCTCTGGAAAATTTTACCGTTTTAAAAACGCATTATCGTGCGGAGCATAAAACTAATGGATATGTAAAATGTTGTggcaaaaaattactcaaacgTGGTGTACTTGTTGATCATTTACACTTGCACAATGACCCAGAATACTTCAAGTGTCAACATTGTGGAAAATTAATGACCGATCGGCGTGGGCATGAAAAGCACGTTCAGTTTTTTCACGGCTCAAGAGAACGCATATATCAATGTGATATTTGTTCGAAATCATTCTTTCGCCGCGAAGTTCTCGCAAGACATTACCAAATACATGCTTCAGAGGAAGATAAACGAGTAAAATGTACGCAATGTGAAAAGACGTTCGGAAGTGAATACCATATGAAACAGCACTTAAACCTATACCACCTTCGGTTGTATGCGAAAATATGTGATATTTGTGGCAAATCTTTTACTGGCGGTGAAGCTTTCCGCCGACATCAGCAAGAGCATGCTGGTCTAccaaaatcaaaagtaaaatgCGAAATATGCAACACTGAACTATCGACAAAGAATGGTCTAACACAACATATTAAGACAATGCACACTGAGGAGTATCAAAAACCTCAAGTTTGTTcaatatgttcaaaaatatcGCCATCACTTCGATCTCATATCACACATTTGAGAAATGTGCATGCCACAAAGATGCATGACTGTAAAATCTGTGATAAAACTTTCAATAAGCCCATCGATTTACGTGAACACATGGCTACCCATACCGGTGAAGCGTTGTACACTTGCACATTTTGTCCAAAAACGTTCCAATCGCACTCGAATATGTACAAACATCGAAAGCAGAAACATCCTCAAGAATGGTcagaaaaatgtttgaaaaagaaTATAGCAAAAGAAATGGTAAACAAGATAGTTGGTCTTCAATATTCTAAAGACCCTGACCCAACGCGAACTGGTTGTGCTGGCTTTCCCGGACatgattga
- Protein Sequence
- MFDKLSCILCLEKANTSVDQINIDLEDTQSVNAREIIKHHFKEELIMLPFLITKIVCYQCWELVQTFHEFYVRVQNAHIAATNTLKSLQETEIPVTEIKIEPDAVDELASPPKRRRGRPRRQKVDKKSEESVPIGFKQCTVGIEPLLLPFNSSNSEETKDLDFENFEIKSEVMPSEFMDATDCIQQSDVANETKSVVPDSSAQNNDESLLVPKKKIVCKKRGPKRKRRDSKAEVKRDYNKLRHKTSDYDDYIAQHFKLTCFLCQKSLENFTVLKTHYRAEHKTNGYVKCCGKKLLKRGVLVDHLHLHNDPEYFKCQHCGKLMTDRRGHEKHVQFFHGSRERIYQCDICSKSFFRREVLARHYQIHASEEDKRVKCTQCEKTFGSEYHMKQHLNLYHLRLYAKICDICGKSFTGGEAFRRHQQEHAGLPKSKVKCEICNTELSTKNGLTQHIKTMHTEEYQKPQVCSICSKISPSLRSHITHLRNVHATKMHDCKICDKTFNKPIDLREHMATHTGEALYTCTFCPKTFQSHSNMYKHRKQKHPQEWSEKCLKKNIAKEMVNKIVGLQYSKDPDPTRTGCAGFPGHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -