Nasi008305.1
Basic Information
- Insect
- Neoceratitis asiatica
- Gene Symbol
- -
- Assembly
- GCA_030068015.2
- Location
- CM061526.1:60527632-60529456[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0051 0.35 11.6 1.6 1 23 184 206 184 206 0.97 2 11 5.3 3.6e+02 2.2 0.7 10 23 225 239 217 239 0.78 3 11 0.046 3.2 8.6 0.8 1 22 244 265 244 268 0.87 4 11 1.9 1.3e+02 3.6 0.5 1 23 275 304 275 304 0.78 5 11 0.0072 0.49 11.2 3.4 1 23 377 400 377 400 0.95 6 11 0.00017 0.012 16.3 0.7 2 23 406 427 405 427 0.96 7 11 3.1e-06 0.00022 21.8 0.2 2 23 445 466 444 466 0.97 8 11 3.7e-05 0.0026 18.4 6.4 1 23 475 498 475 498 0.97 9 11 6e-05 0.0041 17.7 3.7 1 23 504 527 504 527 0.96 10 11 0.0012 0.081 13.6 8.1 1 23 533 555 533 555 0.96 11 11 0.0037 0.26 12.1 1.2 2 23 562 584 561 584 0.96
Sequence Information
- Coding Sequence
- ATGGCACAATCGCAATTGCACACAgatgaaattttgaagaaaatatacgcGGAAcagaaaactttaattaatttttttgatgtcaTCCTCGGATTCCTTACACGCAACACAAATTTTGGTTTAATAGACGCTGAAGAAAGGAATCGCTTACAAGAGTGTATAAACAAAACGTTGTCGCATTGTGATCCTGTAATCGAAATCTCACCCttgttaaaaaatgttgctGTCGAAAAAAGTGCCATTTTTGAGACTACTGAAAACTATACTGAAGGTGAAAATTTGGTTACACAGTTACGGTTAAGGTCTTCAACACTTGCCACGGAAAATGCTTTGAAAACGAGTTCTGTTCCTAGATTTGGTACTATAGAAATAACTGAAACATCGTGCAATATCCAAAATCCAGCAACACccaagtcagaaatacaattCGATACAAAGGACCGAAAATGGCGCAGTATTTTACCTAAAAAACAGCAAACTTTCCAAGGCAATGTAGAAGAAAGTATTACAAATAGAAATGTTAAATCCCAAAACAAATCTAAGCGTGTGTATAAATGTACCGAATGTACAGATACATTTAACTCATTTCGCCAACTTAAAGTACATGAAACTATACACACATCCAATTCGGATGGAAACGCTATTAGCATTTGCGTGTACTGTTGCAGCTTGTATGCCAATGCTGAGACTTTAGAAAAACACATTAACGAATGTCATGTTAATGCAAACTATGTGTGTGTGCCCTGCACAAAAGAGTACAAAAGTCGTGGACAATTATTAAAACATGTACATTCGAATGTACACAACGCCAAGTCATTGTTATACTATTGTGGCTTATGCCCCCGTTCTGAAAAATTGCCTATAGAATTCCCTTCACGTGCTGCTTTACAACAACATTATCAGGAAACGCATTTACTTATGCCAGTTAACCAAGATGAAGATgatgttgaaattgaaatgaatgaagaatTTCTGGAcgaatttcttttgaataatgTCAATgagaattcttttaatttttcagaatgCTGGGACgcattagatttaaatttaccTGATATGTTACATATGACAAATTCCGAAGGAAACTCAACTCATGCTATAGATAATGCAAATACTGGATTCTTTTATAAATGTCCAAAATGTTATGATGGCTTCAAAAACCAGAAAACCTTATTTCAACATATAGCACATAAGCATGGATTACCACTTTTAATATGCAGTAAATGTGATGCTAGCTTCAAGGATTACACTCAATGGATACAACACAAAAGAACACATCAAGTGCAATTGGGTAGTGGGCGCCACTCTAAAGATAAGGATAAGTTGTTGCAATGTGGTATATGTGATAAGATTTTTCGAAGCAGTCCAGCGCTAAACTATCatataaaaacacatttacGTGGCTTCTTAGATGCACCACACGAATGTCCATACTGCAAAAAATGCTTTCACACTGACACTAATCTGAAACAACATATACGTATAGTACATTGCCTAAATAAGCGACACACCTGTGAGCTTTGTGACAAACTTTTTTCTACCTTAGACCATTTAAAAAAGCATGTACTAAGTACACATCAAAATGAGCGGAAACATATTTGCCATGTCTGTGCGAAATCATTTACACAACTGTGCCACCTAAAacaacatttaaatatacacattGTAGGCAAGTCACAACAGTGTTTAAAATGCGAAGAGAAATTTTGGCGAAAAATTGATTTACAACGACACATGATTAAAAAGCATAactaa
- Protein Sequence
- MAQSQLHTDEILKKIYAEQKTLINFFDVILGFLTRNTNFGLIDAEERNRLQECINKTLSHCDPVIEISPLLKNVAVEKSAIFETTENYTEGENLVTQLRLRSSTLATENALKTSSVPRFGTIEITETSCNIQNPATPKSEIQFDTKDRKWRSILPKKQQTFQGNVEESITNRNVKSQNKSKRVYKCTECTDTFNSFRQLKVHETIHTSNSDGNAISICVYCCSLYANAETLEKHINECHVNANYVCVPCTKEYKSRGQLLKHVHSNVHNAKSLLYYCGLCPRSEKLPIEFPSRAALQQHYQETHLLMPVNQDEDDVEIEMNEEFLDEFLLNNVNENSFNFSECWDALDLNLPDMLHMTNSEGNSTHAIDNANTGFFYKCPKCYDGFKNQKTLFQHIAHKHGLPLLICSKCDASFKDYTQWIQHKRTHQVQLGSGRHSKDKDKLLQCGICDKIFRSSPALNYHIKTHLRGFLDAPHECPYCKKCFHTDTNLKQHIRIVHCLNKRHTCELCDKLFSTLDHLKKHVLSTHQNERKHICHVCAKSFTQLCHLKQHLNIHIVGKSQQCLKCEEKFWRKIDLQRHMIKKHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -