Basic Information

Insect: Neoceratitis asiatica
Gene Symbol: -
Assembly: GCA_030068015.2
Location: CM061525.1:37768943-37773644[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.3e-06 0.0003 21.3 4.8 1 23 391 413 391 413 0.98

2 8 1.7e-07 1.2e-05 25.7 2.2 1 23 419 441 419 441 0.99

3 8 0.00043 0.03 15.0 3.2 1 23 447 469 447 469 0.99

4 8 4.3e-05 0.0029 18.2 0.4 1 23 475 498 475 498 0.97

5 8 5.4e-06 0.00037 21.0 0.4 2 23 511 532 510 532 0.97

6 8 0.00013 0.0089 16.7 5.0 1 23 612 634 612 634 0.99

7 8 0.00036 0.025 15.3 1.6 1 23 639 662 639 662 0.96

8 8 0.57 39 5.2 0.5 1 19 669 687 669 692 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.3e-06	0.0003	21.3	4.8	1	23	391	413	391	413	0.98
2	8	1.7e-07	1.2e-05	25.7	2.2	1	23	419	441	419	441	0.99
3	8	0.00043	0.03	15.0	3.2	1	23	447	469	447	469	0.99
4	8	4.3e-05	0.0029	18.2	0.4	1	23	475	498	475	498	0.97
5	8	5.4e-06	0.00037	21.0	0.4	2	23	511	532	510	532	0.97
6	8	0.00013	0.0089	16.7	5.0	1	23	612	634	612	634	0.99
7	8	0.00036	0.025	15.3	1.6	1	23	639	662	639	662	0.96
8	8	0.57	39	5.2	0.5	1	19	669	687	669	692	0.91

Sequence Information

Coding Sequence: ATGAGTTTTCGGGTCAATATAGATATTTGTCGCGTTTGTATGAAATCGGAAGATGGCGTTTCACTTGTGGATAATAAGGAATTAGGcgaaaagtttttgtttacaaCTCACTTGaagCTCAACGATAGTGACGGCATGCCTTccataatttgcaataaatgctCAAAGCGTCTCTGCGTAGCCTACGATTTTGTGAAGTTAGCTCACGAATCagagaaaaatttgaaagcttTTCTCACCAAAATCAGTaaagattttaaattagttacaaATAAGTCTTCAGAAAAGTCTAGTGGAAACGATGACGAAGATGATGATGCGATTTCAATTATACTTGATGAAGCGAGTATTGATAAAGCGGCTGAAGAACCGGAGCAGTCAGTTACAAAGGAAGCTGATGGAAAAGAGGATTACAATACGGCATTAACACCCCAGCCACCAAGTAGAGAGGAAAATATTTCTGACCAAGTGACTCTAAACACCACAcaggatttttcaataaataccgATACTAGGGCAGTGAAACCCACTATTAAGAAAGAAACTATGGAagaaaatgtaaacattttCGAATCCTTTGAGTGCGATATGCAAATAGAGACTGGAGATGAAGAGGACGTTGACTTAAACAAAATTACTCCGGTTACGGAAAATCCAAAGGACGCTTCTTCTGAGCACGACATGCAAATATACAATTATACCGACGAAGAGTCGCAAGTAGAGTTGGAAATATTAGAAGACAATATACAACCGAGTGAAGATACACGCAGCAGTCTTGGAGTGGTGGGACCTCAAACGGAAAATAAACGCGATGGATTTCTTAAAGAGTATCAGGCAATGTTAGAGGAAGATGGTGAATATCTAGAAGATAATAGTTCCACCCAAGAAAAGAGTACAGTAGAGAACGATTTGCATTTGTATGATGAGACTGAAGAGTTATTAGACGATACGGATGACGAAATTAAAACATTGGATGAAGCTGATTTGGAAGAAAATCATGATATTGGTATCTCCTCGCTGCTGAGCTCGCAAACTGAAGACATGAGAAACGAAGAAAATATGCAAGCAACCAAAAGTAAAGCACGTCGAGGTCAATCTAGAGCCAGCGGTCATACAGTGACCGTAAAACCAGCAAAGCGAAATGGAGATAGCTCAAACACTACAAAGCGTTTCTACTGTCTGAAATGCCATCGTGACTTTAGCACCAAAACTAACCTTACACGTCATATGGCCACACATGATGGCCATCGACCGTTTAAATGCGATGTTTGTAACAAGAGCTTCACCCAGAATGTATCATTAAAGCagcatatgtatacacatacggGTGAAAAACCCTATCAATGCGAGATCTGCAACAGAGGCTTCACACAGTGCAAAAGTCTGGTGTTCCACATTCGAAGACATACTGGTGATAAACCATTTCCATGTGAAAAATGCGGTGCGCTCTTCCGGCAAAAGGACGGTTTGAAGACTCACATTCTGAAAAGGCATACTATCAAATCTCAAAAAGGTAATAAAGAGTTAATAACCTGTGATATATGTAAGCAGGTATTTGCTGATAAAAATTTACTGCAAGAGCATATGAAGAAACATTTAAACGATTATGTTCGTGTCGACTCGGCAATGTCATGTGCGAATCGAGAAATAAATTCCGACGAAAATTCTCAGGTTTTATTCGACTATACGCGTACAGAGGATGATCCATTACATGATAAATCGAACGTTTTCATAAGCGAGCCGACTATTGAATGTGTAGAAGATATTGGCACCGCAGCACATGTGGTAGATCTCATGACAACCTCGGCTTTGGAGCCCAGCCGTGCAAAGAAATTCCAATGTcgcaaatgctttaaatgttttGCCATCAAAAGAAACCTGCTTCGTCACTTGCGCATACATGAAGCCTCAGACTTTCCTTGTGAGTCATGTGATCTTTGCTTTGCCACCAATGACGACTTACATGTGCATACACTAAGAGAACATAGAAAATCTGTGGAACTCTATAAATGCGGACTTTGCATTTCGGTCTTCTCTACTGCAGAAGATATGCAGAAGCATTGTATTGTAGAACATGCCCAACAATTTGATTGA
Protein Sequence: MSFRVNIDICRVCMKSEDGVSLVDNKELGEKFLFTTHLKLNDSDGMPSIICNKCSKRLCVAYDFVKLAHESEKNLKAFLTKISKDFKLVTNKSSEKSSGNDDEDDDAISIILDEASIDKAAEEPEQSVTKEADGKEDYNTALTPQPPSREENISDQVTLNTTQDFSINTDTRAVKPTIKKETMEENVNIFESFECDMQIETGDEEDVDLNKITPVTENPKDASSEHDMQIYNYTDEESQVELEILEDNIQPSEDTRSSLGVVGPQTENKRDGFLKEYQAMLEEDGEYLEDNSSTQEKSTVENDLHLYDETEELLDDTDDEIKTLDEADLEENHDIGISSLLSSQTEDMRNEENMQATKSKARRGQSRASGHTVTVKPAKRNGDSSNTTKRFYCLKCHRDFSTKTNLTRHMATHDGHRPFKCDVCNKSFTQNVSLKQHMYTHTGEKPYQCEICNRGFTQCKSLVFHIRRHTGDKPFPCEKCGALFRQKDGLKTHILKRHTIKSQKGNKELITCDICKQVFADKNLLQEHMKKHLNDYVRVDSAMSCANREINSDENSQVLFDYTRTEDDPLHDKSNVFISEPTIECVEDIGTAAHVVDLMTTSALEPSRAKKFQCRKCFKCFAIKRNLLRHLRIHEASDFPCESCDLCFATNDDLHVHTLREHRKSVELYKCGLCISVFSTAEDMQKHCIVEHAQQFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -